Here is a list of all class members with links to the classes they belong to:
- l -
- L95() : bpp::L95
- l_ : bpp::F81, bpp::F84, bpp::HKY85, bpp::K80, bpp::LegacyMarginalAncestralStateReconstruction, bpp::T92, bpp::TN93
- label_ : bpp::LabelSubstitutionCount
- LabelCollapsedNodesTreeDrawingListener() : bpp::LabelCollapsedNodesTreeDrawingListener
- LabelInnerNodesTreeDrawingListener() : bpp::LabelInnerNodesTreeDrawingListener
- LabelSubstitutionCount() : bpp::LabelSubstitutionCount
- lambda_ : bpp::BinarySubstitutionModel, bpp::BioNJ, bpp::LegacyOptimizationTools::ScaleFunction, bpp::RE08, bpp::RN95, bpp::TwoParameterBinarySubstitutionModel
- LaplaceSubstitutionCount() : bpp::LaplaceSubstitutionCount
- layerModel() : bpp::CodonAdHocSubstitutionModel
- leadMod_ : bpp::ModelPath
- leaf_ : bpp::DRASDRTreeLikelihoodLeafData, bpp::DRTreeParsimonyLeafData
- leafBitsets_ : bpp::DRTreeParsimonyLeafData
- leafData() : bpp::DRTreeParsimonyData
- leafData_ : bpp::DRASDRTreeLikelihoodData, bpp::DRTreeParsimonyData
- leafLikelihood_ : bpp::DRASDRTreeLikelihoodLeafData
- LeafNamesTreeDrawingListener() : bpp::LeafNamesTreeDrawingListener
- leaves_ : bpp::NonHomogeneousSequenceSimulator
- leavesId_ : bpp::SiteSimulationResult
- leftEigenVectors_ : bpp::AbstractSubstitutionModel, bpp::DecompositionMethods, bpp::MarkovModulatedSubstitutionModel
- leftIEigenVectors_ : bpp::DecompositionMethods
- LegacyAbstractMapping() : bpp::LegacyAbstractMapping
- LegacyAbstractRewardMapping() : bpp::LegacyAbstractRewardMapping
- LegacyAbstractSubstitutionMapping() : bpp::LegacyAbstractSubstitutionMapping
- LegacyAncestralStateReconstruction() : bpp::LegacyAncestralStateReconstruction
- LegacyMappingInterface() : bpp::LegacyMappingInterface
- LegacyMarginalAncestralStateReconstruction() : bpp::LegacyMarginalAncestralStateReconstruction
- LegacyOptimizationTools() : bpp::LegacyOptimizationTools
- LegacyPhylogeneticsApplicationTools() : bpp::LegacyPhylogeneticsApplicationTools
- LegacyProbabilisticRewardMapping() : bpp::LegacyProbabilisticRewardMapping
- LegacyProbabilisticSubstitutionMapping() : bpp::LegacyProbabilisticSubstitutionMapping
- LegacyRewardMappingInterface() : bpp::LegacyRewardMappingInterface
- LegacyRewardMappingTools() : bpp::LegacyRewardMappingTools
- LegacySubstitutionMappingInterface() : bpp::LegacySubstitutionMappingInterface
- LegacySubstitutionMappingTools() : bpp::LegacySubstitutionMappingTools
- length : bpp::ClusterInfos, bpp::IODAG::Element, bpp::IOTree::Element, bpp::TreeTemplateTools::Element
- length_ : bpp::CladogramDrawBranchEvent, bpp::PhyloBranch, bpp::WordFromUniqueFrequencySet
- lessEigen() : bpp::MultinomialFromTransitionModel
- lessEigenType : bpp::MultinomialFromTransitionModel
- LG08() : bpp::LG08
- LG10_EX_EHO() : bpp::LG10_EX_EHO
- LGL08_CAT() : bpp::LGL08_CAT
- lik_ : bpp::AbstractLkTransitionModel
- Lik_t() : bpp::AbstractLkTransitionModel, bpp::BranchModelInterface, bpp::MultinomialFromTransitionModel, bpp::TransitionFromTransitionModel, bpp::TransitionModelInterface
- likCal_ : bpp::AlignedPhyloLikelihoodMixture, bpp::AlignedPhyloLikelihoodProduct, bpp::MixtureProcessPhyloLikelihood, bpp::OnABranchPhyloLikelihood, bpp::OneProcessSequencePhyloLikelihood, bpp::PartitionProcessPhyloLikelihood, bpp::PhyloLikelihoodFormula, bpp::SingleProcessPhyloLikelihood
- likelihood_ : bpp::LegacyMarginalAncestralStateReconstruction, bpp::LikelihoodCalculation, bpp::MarginalAncestralReconstruction, bpp::StochasticMapping
- likelihoodCalculation() : bpp::AlignedPhyloLikelihoodAutoCorrelation, bpp::AlignedPhyloLikelihoodHmm, bpp::AlignedPhyloLikelihoodMixture, bpp::AlignedPhyloLikelihoodProduct, bpp::AutoCorrelationProcessPhyloLikelihood, bpp::HmmProcessPhyloLikelihood
- LikelihoodCalculation() : bpp::LikelihoodCalculation
- likelihoodCalculation() : bpp::MixtureProcessPhyloLikelihood, bpp::OnABranchPhyloLikelihood, bpp::OneProcessSequencePhyloLikelihood, bpp::PartitionProcessPhyloLikelihood, bpp::PhyloLikelihoodFormula, bpp::PhyloLikelihoodInterface, bpp::SingleProcessPhyloLikelihood
- LikelihoodCalculationOnABranch() : bpp::LikelihoodCalculationOnABranch, bpp::LikelihoodCalculationSingleProcess
- likelihoodCalculationOnABranch() : bpp::OnABranchPhyloLikelihood
- LikelihoodCalculationSingleProcess : bpp::BackwardLikelihoodTree, bpp::ForwardLikelihoodTree, bpp::LikelihoodCalculationSingleProcess
- likelihoodCalculationSingleProcess() : bpp::OneProcessSequencePhyloLikelihood, bpp::SingleProcessPhyloLikelihood
- likelihoodData() : bpp::DRHomogeneousTreeLikelihood, bpp::DRNonHomogeneousTreeLikelihood, bpp::DRTreeLikelihoodInterface, bpp::RHomogeneousTreeLikelihood, bpp::RNonHomogeneousTreeLikelihood, bpp::TreeLikelihoodInterface
- likelihoodData_ : bpp::DRHomogeneousTreeLikelihood, bpp::DRNonHomogeneousTreeLikelihood, bpp::RHomogeneousTreeLikelihood, bpp::RNonHomogeneousTreeLikelihood
- likelihoodMatrixDim_ : bpp::BackwardLikelihoodTree, bpp::ForwardLikelihoodTree, bpp::LikelihoodCalculationOnABranch
- listener : bpp::OptimizationTools::OptimizationOptions
- listenerModifiesParameters() : bpp::NaNListener
- listeners_ : bpp::AbstractTreeDrawing, bpp::TreeDrawingDisplayControler
- listModelNames() : bpp::NonHomogeneousSubstitutionProcess, bpp::SubstitutionModelSet
- LLG08_EHO() : bpp::LLG08_EHO
- LLG08_EX2() : bpp::LLG08_EX2
- LLG08_EX3() : bpp::LLG08_EX3
- LLG08_UL2() : bpp::LLG08_UL2
- LLG08_UL3() : bpp::LLG08_UL3
- ln_radix : bpp::ExtendedFloat
- lnL_ : bpp::BranchLikelihood
- log() : bpp::ExtendedFloat, bpp::ExtendedFloatEigen< R, C, EigenType >
- logLikelihoods_ : bpp::PairedSiteLikelihoods
- LogSumExp() : bpp::LogSumExp< R, T0, T1 >
- lParPmodel_ : bpp::AbstractBiblioTransitionModel
- lround() : bpp::ExtendedFloat
- lt : bpp::LikelihoodCalculationSingleProcess::RateCategoryTrees
- LWORD : bpp::BipartitionTools