Here is a list of all class members with links to the classes they belong to:

- l -

• L95() : bpp::L95
• l_ : bpp::F81 , bpp::F84 , bpp::HKY85 , bpp::K80 , bpp::LegacyMarginalAncestralStateReconstruction , bpp::T92 , bpp::TN93
• label_ : bpp::LabelSubstitutionCount
• LabelCollapsedNodesTreeDrawingListener() : bpp::LabelCollapsedNodesTreeDrawingListener
• LabelInnerNodesTreeDrawingListener() : bpp::LabelInnerNodesTreeDrawingListener
• LabelSubstitutionCount() : bpp::LabelSubstitutionCount
• lambda_ : bpp::BinarySubstitutionModel , bpp::BioNJ , bpp::LegacyOptimizationTools::ScaleFunction , bpp::RE08 , bpp::RN95 , bpp::TwoParameterBinarySubstitutionModel
• LaplaceSubstitutionCount() : bpp::LaplaceSubstitutionCount
• layerModel() : bpp::CodonAdHocSubstitutionModel
• leadMod_ : bpp::ModelPath
• leaf_ : bpp::DRASDRTreeLikelihoodLeafData , bpp::DRTreeParsimonyLeafData
• leafBitsets_ : bpp::DRTreeParsimonyLeafData
• leafData() : bpp::DRTreeParsimonyData
• leafData_ : bpp::DRASDRTreeLikelihoodData , bpp::DRTreeParsimonyData
• leafLikelihood_ : bpp::DRASDRTreeLikelihoodLeafData
• LeafNamesTreeDrawingListener() : bpp::LeafNamesTreeDrawingListener
• leaves_ : bpp::NonHomogeneousSequenceSimulator
• leavesId_ : bpp::SiteSimulationResult
• leftEigenVectors_ : bpp::AbstractSubstitutionModel , bpp::DecompositionMethods , bpp::MarkovModulatedSubstitutionModel
• leftIEigenVectors_ : bpp::DecompositionMethods
• LegacyAbstractMapping() : bpp::LegacyAbstractMapping
• LegacyAbstractRewardMapping() : bpp::LegacyAbstractRewardMapping
• LegacyAbstractSubstitutionMapping() : bpp::LegacyAbstractSubstitutionMapping
• LegacyAncestralStateReconstruction() : bpp::LegacyAncestralStateReconstruction
• LegacyMappingInterface() : bpp::LegacyMappingInterface
• LegacyMarginalAncestralStateReconstruction() : bpp::LegacyMarginalAncestralStateReconstruction
• LegacyOptimizationTools() : bpp::LegacyOptimizationTools
• LegacyPhylogeneticsApplicationTools() : bpp::LegacyPhylogeneticsApplicationTools
• LegacyProbabilisticRewardMapping() : bpp::LegacyProbabilisticRewardMapping
• LegacyProbabilisticSubstitutionMapping() : bpp::LegacyProbabilisticSubstitutionMapping
• LegacyRewardMappingInterface() : bpp::LegacyRewardMappingInterface
• LegacyRewardMappingTools() : bpp::LegacyRewardMappingTools
• LegacySubstitutionMappingInterface() : bpp::LegacySubstitutionMappingInterface
• LegacySubstitutionMappingTools() : bpp::LegacySubstitutionMappingTools
• length : bpp::ClusterInfos , bpp::IODAG::Element , bpp::IOTree::Element , bpp::TreeTemplateTools::Element
• length_ : bpp::CladogramDrawBranchEvent , bpp::PhyloBranch , bpp::WordFromUniqueFrequencySet
• lessEigen() : bpp::MultinomialFromTransitionModel
• lessEigenType : bpp::MultinomialFromTransitionModel
• LG08() : bpp::LG08
• LG10_EX_EHO() : bpp::LG10_EX_EHO
• LGL08_CAT() : bpp::LGL08_CAT
• lik_ : bpp::AbstractLkTransitionModel
• Lik_t() : bpp::AbstractLkTransitionModel , bpp::BranchModelInterface , bpp::MultinomialFromTransitionModel , bpp::TransitionFromTransitionModel , bpp::TransitionModelInterface
• likCal_ : bpp::AlignedPhyloLikelihoodMixture , bpp::AlignedPhyloLikelihoodProduct , bpp::MixtureProcessPhyloLikelihood , bpp::OnABranchPhyloLikelihood , bpp::OneProcessSequencePhyloLikelihood , bpp::PartitionProcessPhyloLikelihood , bpp::PhyloLikelihoodFormula , bpp::SingleProcessPhyloLikelihood
• likelihood_ : bpp::LegacyMarginalAncestralStateReconstruction , bpp::LikelihoodCalculation , bpp::MarginalAncestralReconstruction , bpp::StochasticMapping
• likelihoodCalculation() : bpp::AlignedPhyloLikelihoodAutoCorrelation , bpp::AlignedPhyloLikelihoodHmm , bpp::AlignedPhyloLikelihoodMixture , bpp::AlignedPhyloLikelihoodProduct , bpp::AutoCorrelationProcessPhyloLikelihood , bpp::HmmProcessPhyloLikelihood
• LikelihoodCalculation() : bpp::LikelihoodCalculation
• likelihoodCalculation() : bpp::MixtureProcessPhyloLikelihood , bpp::OnABranchPhyloLikelihood , bpp::OneProcessSequencePhyloLikelihood , bpp::PartitionProcessPhyloLikelihood , bpp::PhyloLikelihoodFormula , bpp::PhyloLikelihoodInterface , bpp::SingleProcessPhyloLikelihood
• LikelihoodCalculationOnABranch() : bpp::LikelihoodCalculationOnABranch , bpp::LikelihoodCalculationSingleProcess
• likelihoodCalculationOnABranch() : bpp::OnABranchPhyloLikelihood
• LikelihoodCalculationSingleProcess : bpp::BackwardLikelihoodTree , bpp::ForwardLikelihoodTree , bpp::LikelihoodCalculationSingleProcess
• likelihoodCalculationSingleProcess() : bpp::OneProcessSequencePhyloLikelihood , bpp::SingleProcessPhyloLikelihood
• likelihoodData() : bpp::DRHomogeneousTreeLikelihood , bpp::DRNonHomogeneousTreeLikelihood , bpp::DRTreeLikelihoodInterface , bpp::RHomogeneousTreeLikelihood , bpp::RNonHomogeneousTreeLikelihood , bpp::TreeLikelihoodInterface
• likelihoodData_ : bpp::DRHomogeneousTreeLikelihood , bpp::DRNonHomogeneousTreeLikelihood , bpp::RHomogeneousTreeLikelihood , bpp::RNonHomogeneousTreeLikelihood
• likelihoodMatrixDim_ : bpp::BackwardLikelihoodTree , bpp::ForwardLikelihoodTree , bpp::LikelihoodCalculationOnABranch
• listener : bpp::OptimizationTools::OptimizationOptions
• listenerModifiesParameters() : bpp::NaNListener
• listeners_ : bpp::AbstractTreeDrawing , bpp::TreeDrawingDisplayControler
• listModelNames() : bpp::NonHomogeneousSubstitutionProcess , bpp::SubstitutionModelSet
• LLG08_EHO() : bpp::LLG08_EHO
• LLG08_EX2() : bpp::LLG08_EX2
• LLG08_EX3() : bpp::LLG08_EX3
• LLG08_UL2() : bpp::LLG08_UL2
• LLG08_UL3() : bpp::LLG08_UL3
• ln_radix : bpp::ExtendedFloat
• lnL_ : bpp::BranchLikelihood
• log() : bpp::ExtendedFloat , bpp::ExtendedFloatEigen< R, C, EigenType >
• logLikelihoods_ : bpp::PairedSiteLikelihoods
• LogSumExp() : bpp::LogSumExp< R, T0, T1 >
• lParPmodel_ : bpp::AbstractBiblioTransitionModel
• lround() : bpp::ExtendedFloat
• lt : bpp::LikelihoodCalculationSingleProcess::RateCategoryTrees
• LWORD : bpp::BipartitionTools