- i -

• id_ : bpp::AwareNode , bpp::DrawBranchEvent , bpp::DrawNodeEvent , bpp::Identity< R > , bpp::Node , bpp::NodeNotFoundException , bpp::PhyloBranchNotFoundException , bpp::PhyloNodeNotFoundException
• idToNode_ : bpp::AbstractNonHomogeneousTreeLikelihood
• iEigenValues_ : bpp::AbstractSubstitutionModel , bpp::MarkovModulatedSubstitutionModel
• ind : IntAndInt , StringAndInt
• index_ : bpp::AbstractHomogeneousTreeLikelihood::ConstHomogeneousSiteModelIterator , bpp::AbstractNonHomogeneousTreeLikelihood::ConstNonHomogeneousSiteModelIterator , bpp::AbstractTreeLikelihood::ConstNoPartitionBranchModelIterator , bpp::AbstractTreeLikelihood::SimpleBranchIterator , bpp::AbstractTreeLikelihood::SimpleSiteIterator , bpp::CategorySubstitutionRegister
• indexes_ : bpp::SiteSimulationResult
• indices_ : bpp::SitePatterns
• infos_ : bpp::NodeTemplate< NodeInfos >
• init_ : bpp::Coala , bpp::CoalaCore
• initialized_ : bpp::AbstractTreeLikelihood
• initialState_ : bpp::MutationPath
• insideIProducts_ : bpp::DecompositionMethods
• insideProducts_ : bpp::DecompositionMethods
• INTEGER : bpp::BppOSubstitutionModelFormat
• isDiagonalizable_ : bpp::AbstractSubstitutionModel
• isLeaf : bpp::IODAG::Element , bpp::IOTree::Element , bpp::TreeTemplateTools::Element
• isLengthDefined_ : bpp::PhyloBranch
• isNonSingular_ : bpp::AbstractSubstitutionModel
• isRegComplete_ : bpp::CompleteSubstitutionRegister
• isScalable_ : bpp::AbstractSubstitutionModel
• isValid_ : bpp::Node_DF