bpp-phyl3
3.0.0
Here is a list of all class members with links to the classes they belong to:
- ~ -
~AAExteriorSubstitutionRegister() :
bpp::AAExteriorSubstitutionRegister
~AAInteriorSubstitutionRegister() :
bpp::AAInteriorSubstitutionRegister
~AbstractAgglomerativeDistanceMethod() :
bpp::AbstractAgglomerativeDistanceMethod
~AbstractAlignedPhyloLikelihood() :
bpp::AbstractAlignedPhyloLikelihood
~AbstractAlignedPhyloLikelihoodSet() :
bpp::AbstractAlignedPhyloLikelihoodSet
~AbstractBiblioMixedTransitionModel() :
bpp::AbstractBiblioMixedTransitionModel
~AbstractBiblioSubstitutionModel() :
bpp::AbstractBiblioSubstitutionModel
~AbstractBiblioTransitionModel() :
bpp::AbstractBiblioTransitionModel
~AbstractCodonAAFitnessSubstitutionModel() :
bpp::AbstractCodonAAFitnessSubstitutionModel
~AbstractCodonAARateSubstitutionModel() :
bpp::AbstractCodonAARateSubstitutionModel
~AbstractCodonBGCSubstitutionModel() :
bpp::AbstractCodonBGCSubstitutionModel
~AbstractCodonClusterAASubstitutionModel() :
bpp::AbstractCodonClusterAASubstitutionModel
~AbstractCodonCpGSubstitutionModel() :
bpp::AbstractCodonCpGSubstitutionModel
~AbstractCodonDistanceSubstitutionModel() :
bpp::AbstractCodonDistanceSubstitutionModel
~AbstractCodonFitnessSubstitutionModel() :
bpp::AbstractCodonFitnessSubstitutionModel
~AbstractCodonFrequenciesSubstitutionModel() :
bpp::AbstractCodonFrequenciesSubstitutionModel
~AbstractCodonPhaseFrequenciesSubstitutionModel() :
bpp::AbstractCodonPhaseFrequenciesSubstitutionModel
~AbstractCodonSubstitutionModel() :
bpp::AbstractCodonSubstitutionModel
~AbstractDFPSubstitutionModel() :
bpp::AbstractDFPSubstitutionModel
~AbstractDiscreteRatesAcrossSitesTreeLikelihood() :
bpp::AbstractDiscreteRatesAcrossSitesTreeLikelihood
~AbstractFromSubstitutionModelTransitionModel() :
bpp::AbstractFromSubstitutionModelTransitionModel
~AbstractHomogeneousTreeLikelihood() :
bpp::AbstractHomogeneousTreeLikelihood
~AbstractIMultiPhyloDAG() :
bpp::AbstractIMultiPhyloDAG
~AbstractIMultiPhyloTree() :
bpp::AbstractIMultiPhyloTree
~AbstractIMultiTree() :
bpp::AbstractIMultiTree
~AbstractIPhyloDAG() :
bpp::AbstractIPhyloDAG
~AbstractIPhyloTree() :
bpp::AbstractIPhyloTree
~AbstractITree() :
bpp::AbstractITree
~AbstractKroneckerCodonSubstitutionModel() :
bpp::AbstractKroneckerCodonSubstitutionModel
~AbstractKroneckerWordSubstitutionModel() :
bpp::AbstractKroneckerWordSubstitutionModel
~AbstractLkTransitionModel() :
bpp::AbstractLkTransitionModel
~AbstractMapping() :
bpp::AbstractMapping
~AbstractNonHomogeneousTreeLikelihood() :
bpp::AbstractNonHomogeneousTreeLikelihood
~AbstractNucleotideSubstitutionModel() :
bpp::AbstractNucleotideSubstitutionModel
~AbstractOMultiPhyloDAG() :
bpp::AbstractOMultiPhyloDAG
~AbstractOMultiPhyloTree() :
bpp::AbstractOMultiPhyloTree
~AbstractOMultiTree() :
bpp::AbstractOMultiTree
~AbstractOPhyloDAG() :
bpp::AbstractOPhyloDAG
~AbstractOPhyloTree() :
bpp::AbstractOPhyloTree
~AbstractOTree() :
bpp::AbstractOTree
~AbstractPhyloLikelihood() :
bpp::AbstractPhyloLikelihood
~AbstractPhyloLikelihoodSet() :
bpp::AbstractPhyloLikelihoodSet
~AbstractProteinSubstitutionModel() :
bpp::AbstractProteinSubstitutionModel
~AbstractReversibleNucleotideSubstitutionModel() :
bpp::AbstractReversibleNucleotideSubstitutionModel
~AbstractReversibleProteinSubstitutionModel() :
bpp::AbstractReversibleProteinSubstitutionModel
~AbstractReversibleSubstitutionModel() :
bpp::AbstractReversibleSubstitutionModel
~AbstractReward() :
bpp::AbstractReward
~AbstractRewardMapping() :
bpp::AbstractRewardMapping
~AbstractSingleDataPhyloLikelihood() :
bpp::AbstractSingleDataPhyloLikelihood
~AbstractSinglePhyloSubstitutionMapping() :
bpp::AbstractSinglePhyloSubstitutionMapping
~AbstractSubstitutionCount() :
bpp::AbstractSubstitutionCount
~AbstractSubstitutionDistance() :
bpp::AbstractSubstitutionDistance
~AbstractSubstitutionMapping() :
bpp::AbstractSubstitutionMapping
~AbstractSubstitutionModel() :
bpp::AbstractSubstitutionModel
~AbstractSubstitutionRegister() :
bpp::AbstractSubstitutionRegister
~AbstractTotallyWrappedSubstitutionModel() :
bpp::AbstractTotallyWrappedSubstitutionModel
~AbstractTotallyWrappedTransitionModel() :
bpp::AbstractTotallyWrappedTransitionModel
~AbstractTransitionModel() :
bpp::AbstractTransitionModel
~AbstractTreeDrawing() :
bpp::AbstractTreeDrawing
~AbstractTreeLikelihood() :
bpp::AbstractTreeLikelihood
~AbstractTreeLikelihoodData() :
bpp::AbstractTreeLikelihoodData
~AbstractTreeParsimonyData() :
bpp::AbstractTreeParsimonyData
~AbstractTreeParsimonyScore() :
bpp::AbstractTreeParsimonyScore
~AbstractWeightedSubstitutionCount() :
bpp::AbstractWeightedSubstitutionCount
~AbstractWordFrequencySet() :
bpp::AbstractWordFrequencySet
~AbstractWordSubstitutionModel() :
bpp::AbstractWordSubstitutionModel
~AbstractWrappedModel() :
bpp::AbstractWrappedModel
~AbstractWrappedSubstitutionModel() :
bpp::AbstractWrappedSubstitutionModel
~AgglomerativeDistanceMethodInterface() :
bpp::AgglomerativeDistanceMethodInterface
~AlignedPhyloLikelihoodAutoCorrelation() :
bpp::AlignedPhyloLikelihoodAutoCorrelation
~AlignedPhyloLikelihoodHmm() :
bpp::AlignedPhyloLikelihoodHmm
~AlignedPhyloLikelihoodInterface() :
bpp::AlignedPhyloLikelihoodInterface
~AlignedPhyloLikelihoodMixture() :
bpp::AlignedPhyloLikelihoodMixture
~AlignedPhyloLikelihoodProduct() :
bpp::AlignedPhyloLikelihoodProduct
~AncestralStateReconstruction() :
bpp::AncestralStateReconstruction
~AnonymousSubstitutionModel() :
bpp::AnonymousSubstitutionModel
~AutoCorrelationProcessPhyloLikelihood() :
bpp::AutoCorrelationProcessPhyloLikelihood
~AutoCorrelationSequenceEvolution() :
bpp::AutoCorrelationSequenceEvolution
~AwareNode() :
bpp::AwareNode
~BinarySubstitutionModel() :
bpp::BinarySubstitutionModel
~BioNJ() :
bpp::BioNJ
~BipartitionList() :
bpp::BipartitionList
~BipartitionTools() :
bpp::BipartitionTools
~BppOFrequencySetFormat() :
bpp::BppOFrequencySetFormat
~BppOMultiTreeReaderFormat() :
bpp::BppOMultiTreeReaderFormat
~BppOMultiTreeWriterFormat() :
bpp::BppOMultiTreeWriterFormat
~BppORateDistributionFormat() :
bpp::BppORateDistributionFormat
~BppOSubstitutionModelFormat() :
bpp::BppOSubstitutionModelFormat
~BppOTransitionModelFormat() :
bpp::BppOTransitionModelFormat
~BppOTreeReaderFormat() :
bpp::BppOTreeReaderFormat
~BppOTreeWriterFormat() :
bpp::BppOTreeWriterFormat
~BranchedModelSet() :
bpp::BranchedModelSet
~BranchIterator() :
bpp::TreeLikelihoodInterface::BranchIterator
~BranchLikelihood() :
bpp::BranchLikelihood
~BranchModelInterface() :
bpp::BranchModelInterface
~CladogramPlot() :
bpp::CladogramPlot
~Coala() :
bpp::Coala
~CoalaCore() :
bpp::CoalaCore
~CodonAdHocSubstitutionModel() :
bpp::CodonAdHocSubstitutionModel
~CodonDistanceFrequenciesSubstitutionModel() :
bpp::CodonDistanceFrequenciesSubstitutionModel
~CodonDistancePhaseFrequenciesSubstitutionModel() :
bpp::CodonDistancePhaseFrequenciesSubstitutionModel
~CodonDistanceSubstitutionModel() :
bpp::CodonDistanceSubstitutionModel
~CodonFromIndependentFrequencySet() :
bpp::CodonFromIndependentFrequencySet
~CodonFromUniqueFrequencySet() :
bpp::CodonFromUniqueFrequencySet
~CodonReversibleSubstitutionModelInterface() :
bpp::CodonReversibleSubstitutionModelInterface
~CodonSameAARateSubstitutionModel() :
bpp::CodonSameAARateSubstitutionModel
~CodonSubstitutionModelInterface() :
bpp::CodonSubstitutionModelInterface
~CompleteSubstitutionRegister() :
bpp::CompleteSubstitutionRegister
~ConfiguredDistribution() :
bpp::ConfiguredDistribution
~ConfiguredFrequencySet() :
bpp::ConfiguredFrequencySet
~ConfiguredModel() :
bpp::ConfiguredModel
~ConfiguredParameter() :
bpp::ConfiguredParameter
~ConfiguredSimplex() :
bpp::ConfiguredSimplex
~ConfiguredTransitionMatrix() :
bpp::ConfiguredTransitionMatrix
~ConstBranchModelDescription() :
bpp::TreeLikelihoodInterface::ConstBranchModelDescription
~ConstBranchModelIterator() :
bpp::TreeLikelihoodInterface::ConstBranchModelIterator
~ConstSiteModelDescription() :
bpp::TreeLikelihoodInterface::ConstSiteModelDescription
~ConstSiteModelIterator() :
bpp::TreeLikelihoodInterface::ConstSiteModelIterator
~CoreCodonSubstitutionModelInterface() :
bpp::CoreCodonSubstitutionModelInterface
~D1WalkSubstitutionModel() :
bpp::D1WalkSubstitutionModel
~DecompositionMethods() :
bpp::DecompositionMethods
~DecompositionReward() :
bpp::DecompositionReward
~DecompositionSubstitutionCount() :
bpp::DecompositionSubstitutionCount
~DetailedSiteSimulatorInterface() :
bpp::DetailedSiteSimulatorInterface
~DFPDistanceFrequenciesSubstitutionModel() :
bpp::DFPDistanceFrequenciesSubstitutionModel
~DiscreteRatesAcrossSitesTreeLikelihoodInterface() :
bpp::DiscreteRatesAcrossSitesTreeLikelihoodInterface
~DistanceEstimation() :
bpp::DistanceEstimation
~DistanceMethodInterface() :
bpp::DistanceMethodInterface
~DRASDRTreeLikelihoodData() :
bpp::DRASDRTreeLikelihoodData
~DRASDRTreeLikelihoodNodeData() :
bpp::DRASDRTreeLikelihoodNodeData
~DRASRTreeLikelihoodData() :
bpp::DRASRTreeLikelihoodData
~DrawBranchEvent() :
bpp::DrawBranchEvent
~DrawNodeEvent() :
bpp::DrawNodeEvent
~DrawTreeEvent() :
bpp::DrawTreeEvent
~DRHomogeneousMixedTreeLikelihood() :
bpp::DRHomogeneousMixedTreeLikelihood
~DRHomogeneousTreeLikelihood() :
bpp::DRHomogeneousTreeLikelihood
~DRNonHomogeneousTreeLikelihood() :
bpp::DRNonHomogeneousTreeLikelihood
~DRTreeLikelihoodInterface() :
bpp::DRTreeLikelihoodInterface
~DRTreeParsimonyData() :
bpp::DRTreeParsimonyData
~DRTreeParsimonyScore() :
bpp::DRTreeParsimonyScore
~DSO78() :
bpp::DSO78
~EmbeddedModel() :
bpp::LGL08_CAT::EmbeddedModel
~EquiprobableSubstitutionModel() :
bpp::EquiprobableSubstitutionModel
~EvolutionSequenceSimulator() :
bpp::EvolutionSequenceSimulator
~ExtendedFloatEigen() :
bpp::ExtendedFloatEigen< R, C, EigenType >
~ExtendedNewick() :
bpp::ExtendedNewick
~F81() :
bpp::F81
~F84() :
bpp::F84
~FromMixtureSubstitutionModel() :
bpp::FromMixtureSubstitutionModel
~FromModelFrequencySet() :
bpp::FromModelFrequencySet
~FullPerAACodonFrequencySet() :
bpp::FullPerAACodonFrequencySet
~G2001() :
bpp::G2001
~gBGC() :
bpp::gBGC
~GeneralSubstitutionRegister() :
bpp::GeneralSubstitutionRegister
~GivenDataSubstitutionProcessSequenceSimulator() :
bpp::GivenDataSubstitutionProcessSequenceSimulator
~GTR() :
bpp::GTR
~GY94() :
bpp::GY94
~HierarchicalClustering() :
bpp::HierarchicalClustering
~HKY85() :
bpp::HKY85
~HmmLikelihood_DF() :
bpp::HmmLikelihood_DF
~HmmPhyloAlphabet() :
bpp::HmmPhyloAlphabet
~HmmProcessAlphabet() :
bpp::HmmProcessAlphabet
~HmmProcessPhyloLikelihood() :
bpp::HmmProcessPhyloLikelihood
~HmmSequenceEvolution() :
bpp::HmmSequenceEvolution
~HyperNode() :
bpp::MixedSubstitutionModelSet::HyperNode
~IFrequencySet() :
bpp::IFrequencySet
~IMultiPhyloDAG() :
bpp::IMultiPhyloDAG
~IMultiPhyloTree() :
bpp::IMultiPhyloTree
~IMultiTree() :
bpp::IMultiTree
~InOrderTreeIterator() :
bpp::InOrderTreeIterator
~IODAG() :
bpp::IODAG
~IoFrequencySet() :
bpp::IoFrequencySet
~IOFrequencySetFactory() :
bpp::IOFrequencySetFactory
~IoSubstitutionModel() :
bpp::IoSubstitutionModel
~IOSubstitutionModelFactory() :
bpp::IOSubstitutionModelFactory
~IOTree() :
bpp::IOTree
~IOTreeFactory() :
bpp::IOTreeFactory
~IPhyloDAG() :
bpp::IPhyloDAG
~IPhyloTree() :
bpp::IPhyloTree
~ISubstitutionModel() :
bpp::ISubstitutionModel
~ITree() :
bpp::ITree
~JCnuc() :
bpp::JCnuc
~JCprot() :
bpp::JCprot
~JTT92() :
bpp::JTT92
~K80() :
bpp::K80
~KCM() :
bpp::KCM
~KroneckerCodonDistanceFrequenciesSubstitutionModel() :
bpp::KroneckerCodonDistanceFrequenciesSubstitutionModel
~KroneckerCodonDistanceSubstitutionModel() :
bpp::KroneckerCodonDistanceSubstitutionModel
~KroneckerWordSubstitutionModel() :
bpp::KroneckerWordSubstitutionModel
~L95() :
bpp::L95
~LabelSubstitutionCount() :
bpp::LabelSubstitutionCount
~LaplaceSubstitutionCount() :
bpp::LaplaceSubstitutionCount
~LegacyAbstractMapping() :
bpp::LegacyAbstractMapping
~LegacyAbstractRewardMapping() :
bpp::LegacyAbstractRewardMapping
~LegacyAbstractSubstitutionMapping() :
bpp::LegacyAbstractSubstitutionMapping
~LegacyAncestralStateReconstruction() :
bpp::LegacyAncestralStateReconstruction
~LegacyMappingInterface() :
bpp::LegacyMappingInterface
~LegacyMarginalAncestralStateReconstruction() :
bpp::LegacyMarginalAncestralStateReconstruction
~LegacyOptimizationTools() :
bpp::LegacyOptimizationTools
~LegacyPhylogeneticsApplicationTools() :
bpp::LegacyPhylogeneticsApplicationTools
~LegacyProbabilisticRewardMapping() :
bpp::LegacyProbabilisticRewardMapping
~LegacyProbabilisticSubstitutionMapping() :
bpp::LegacyProbabilisticSubstitutionMapping
~LegacyRewardMappingInterface() :
bpp::LegacyRewardMappingInterface
~LegacyRewardMappingTools() :
bpp::LegacyRewardMappingTools
~LegacySubstitutionMappingInterface() :
bpp::LegacySubstitutionMappingInterface
~LegacySubstitutionMappingTools() :
bpp::LegacySubstitutionMappingTools
~LG08() :
bpp::LG08
~MappingInterface() :
bpp::MappingInterface
~MarginalAncestralReconstruction() :
bpp::MarginalAncestralReconstruction
~MarkovModulatedFrequencySet() :
bpp::MarkovModulatedFrequencySet
~MarkovModulatedSubstitutionModel() :
bpp::MarkovModulatedSubstitutionModel
~MG94() :
bpp::MG94
~MixedSubstitutionModelSet() :
bpp::MixedSubstitutionModelSet
~MixedTransitionModelInterface() :
bpp::MixedTransitionModelInterface
~MixtureOfATransitionModel() :
bpp::MixtureOfATransitionModel
~MixtureOfTransitionModels() :
bpp::MixtureOfTransitionModels
~MixtureSequenceEvolution() :
bpp::MixtureSequenceEvolution
~ModelPath() :
bpp::ModelPath
~ModelScenario() :
bpp::ModelScenario
~MultinomialFromTransitionModel() :
bpp::MultinomialFromTransitionModel
~MultiProcessSequencePhyloLikelihood() :
bpp::MultiProcessSequencePhyloLikelihood
~MutationPath() :
bpp::MutationPath
~MutationProcess() :
bpp::MutationProcess
~NaiveSubstitutionCount() :
bpp::NaiveSubstitutionCount
~NeighborJoining() :
bpp::NeighborJoining
~Newick() :
bpp::Newick
~NexusIOTree() :
bpp::NexusIOTree
~Nhx() :
bpp::Nhx
~NNIHomogeneousTreeLikelihood() :
bpp::NNIHomogeneousTreeLikelihood
~NNISearchable() :
bpp::NNISearchable
~NNITopologyListener() :
bpp::NNITopologyListener
~NNITopologyListener2() :
bpp::NNITopologyListener2
~NNITopologySearch() :
bpp::NNITopologySearch
~Node() :
bpp::MixedSubstitutionModelSet::HyperNode::Node
,
bpp::Node
~Node_DF() :
bpp::Node_DF
~NodeException() :
bpp::NodeException
~NodeNotFoundException() :
bpp::NodeNotFoundException
~NodePException() :
bpp::NodePException
~NodeTemplate() :
bpp::NodeTemplate< NodeInfos >
~NonHomogeneousSequenceSimulator() :
bpp::NonHomogeneousSequenceSimulator
~NonHomogeneousSubstitutionProcess() :
bpp::NonHomogeneousSubstitutionProcess
~NucleotideReversibleSubstitutionModelInterface() :
bpp::NucleotideReversibleSubstitutionModelInterface
~NucleotideSubstitutionModelInterface() :
bpp::NucleotideSubstitutionModelInterface
~OFrequencySet() :
bpp::OFrequencySet
~OMultiPhyloDAG() :
bpp::OMultiPhyloDAG
~OMultiPhyloTree() :
bpp::OMultiPhyloTree
~OMultiTree() :
bpp::OMultiTree
~OneChangeRegisterTransitionModel() :
bpp::OneChangeRegisterTransitionModel
~OneChangeTransitionModel() :
bpp::OneChangeTransitionModel
~OneJumpSubstitutionCount() :
bpp::OneJumpSubstitutionCount
~OneProcessSequencePhyloLikelihood() :
bpp::OneProcessSequencePhyloLikelihood
~OneProcessSequenceSubstitutionMapping() :
bpp::OneProcessSequenceSubstitutionMapping
~OPhyloDAG() :
bpp::OPhyloDAG
~OPhyloTree() :
bpp::OPhyloTree
~OptimizationTools() :
bpp::OptimizationTools
~OSubstitutionModel() :
bpp::OSubstitutionModel
~OTree() :
bpp::OTree
~PairedSiteLikelihoods() :
bpp::PairedSiteLikelihoods
~PartitionProcessPhyloLikelihood() :
bpp::PartitionProcessPhyloLikelihood
~PartitionSequenceEvolution() :
bpp::PartitionSequenceEvolution
~PathNode() :
bpp::ModelPath::PathNode
~PGMA() :
bpp::PGMA
~PhyloBranch() :
bpp::PhyloBranch
~PhyloBranchException() :
bpp::PhyloBranchException
~PhyloBranchMapping() :
bpp::PhyloBranchMapping
~PhyloBranchNotFoundException() :
bpp::PhyloBranchNotFoundException
~PhyloBranchPException() :
bpp::PhyloBranchPException
~PhyloBranchPropertyNotFoundException() :
bpp::PhyloBranchPropertyNotFoundException
~PhyloBranchReward() :
bpp::PhyloBranchReward
~PhylogeneticsApplicationTools() :
bpp::PhylogeneticsApplicationTools
~PhylogramPlot() :
bpp::PhylogramPlot
~PhyloLikelihoodContainer() :
bpp::PhyloLikelihoodContainer
~PhyloLikelihoodFormula() :
bpp::PhyloLikelihoodFormula
~PhyloLikelihoodInterface() :
bpp::PhyloLikelihoodInterface
~PhyloNode() :
bpp::PhyloNode
~PhyloNodeException() :
bpp::PhyloNodeException
~PhyloNodeNotFoundException() :
bpp::PhyloNodeNotFoundException
~PhyloNodePException() :
bpp::PhyloNodePException
~PhyloNodePropertyNotFoundException() :
bpp::PhyloNodePropertyNotFoundException
~PhyloStatistics() :
bpp::PhyloStatistics
~PhyloSubstitutionMapping() :
bpp::PhyloSubstitutionMapping
~PhyloTreeException() :
bpp::PhyloTreeException
~PhyloTreeTools() :
bpp::PhyloTreeTools
~PNStopCondition() :
bpp::PseudoNewtonOptimizer::PNStopCondition
~PostOrderTreeIterator() :
bpp::PostOrderTreeIterator
~PreOrderTreeIterator() :
bpp::PreOrderTreeIterator
~ProbabilisticRewardMapping() :
bpp::ProbabilisticRewardMapping
~ProbabilisticSubstitutionMapping() :
bpp::ProbabilisticSubstitutionMapping
~PropertyNotFoundException() :
bpp::PropertyNotFoundException
~ProteinReversibleSubstitutionModelInterface() :
bpp::ProteinReversibleSubstitutionModelInterface
~ProteinSubstitutionModelInterface() :
bpp::ProteinSubstitutionModelInterface
~PseudoNewtonOptimizer() :
bpp::PseudoNewtonOptimizer
~RASiteSimulationResult() :
bpp::RASiteSimulationResult
~RateCategoryTrees() :
bpp::LikelihoodCalculationSingleProcess::RateCategoryTrees
~RE08() :
bpp::RE08
~RE08Codon() :
bpp::RE08Codon
~RE08Nucleotide() :
bpp::RE08Nucleotide
~RE08Protein() :
bpp::RE08Protein
~RegisterRatesSubstitutionModel() :
bpp::RegisterRatesSubstitutionModel
~ReversibleSubstitutionModelInterface() :
bpp::ReversibleSubstitutionModelInterface
~Reward() :
bpp::Reward
~RewardMappingInterface() :
bpp::RewardMappingInterface
~RewardMappingTools() :
bpp::RewardMappingTools
~RHomogeneousMixedTreeLikelihood() :
bpp::RHomogeneousMixedTreeLikelihood
~RHomogeneousTreeLikelihood() :
bpp::RHomogeneousTreeLikelihood
~RN95() :
bpp::RN95
~RN95s() :
bpp::RN95s
~RNonHomogeneousMixedTreeLikelihood() :
bpp::RNonHomogeneousMixedTreeLikelihood
~RNonHomogeneousTreeLikelihood() :
bpp::RNonHomogeneousTreeLikelihood
~ScaleFunction() :
bpp::LegacyOptimizationTools::ScaleFunction
~SelectedSubstitutionRegister() :
bpp::SelectedSubstitutionRegister
~SelfMutationProcess() :
bpp::SelfMutationProcess
~SENCA() :
bpp::SENCA
~SequencePhyloLikelihoodInterface() :
bpp::SequencePhyloLikelihoodInterface
~SequenceSimulationTools() :
bpp::SequenceSimulationTools
~SequenceSimulatorInterface() :
bpp::SequenceSimulatorInterface
~SimpleMutationProcess() :
bpp::SimpleMutationProcess
~SimpleSubstitutionProcessSequenceSimulator() :
bpp::SimpleSubstitutionProcessSequenceSimulator
~SimpleSubstitutionProcessSiteSimulator() :
bpp::SimpleSubstitutionProcessSiteSimulator
~SingleDataPhyloLikelihoodInterface() :
bpp::SingleDataPhyloLikelihoodInterface
~SingleProcessSubstitutionMapping() :
bpp::SingleProcessSubstitutionMapping
~SiteIterator() :
bpp::TreeLikelihoodInterface::SiteIterator
~SiteSimulationResult() :
bpp::SiteSimulationResult
~SiteSimulatorInterface() :
bpp::SiteSimulatorInterface
~SortableSite() :
bpp::SitePatterns::SortableSite
~SSR() :
bpp::SSR
~StateMapInterface() :
bpp::StateMapInterface
~StochasticMapping() :
bpp::StochasticMapping
~SubstitutionCountInterface() :
bpp::SubstitutionCountInterface
~SubstitutionMapping() :
bpp::SubstitutionMapping
~SubstitutionMappingTools() :
bpp::SubstitutionMappingTools
~SubstitutionModelInterface() :
bpp::SubstitutionModelInterface
~SubstitutionModelSet() :
bpp::SubstitutionModelSet
~SubstitutionProcessCollection() :
bpp::SubstitutionProcessCollection
~SubstitutionProcessCollectionMember() :
bpp::SubstitutionProcessCollectionMember
~SubstitutionProcessSequenceSimulator() :
bpp::SubstitutionProcessSequenceSimulator
~SubstitutionRegisterInterface() :
bpp::SubstitutionRegisterInterface
~T92() :
bpp::T92
~TN93() :
bpp::TN93
~TopologyChangeEvent() :
bpp::TopologyChangeEvent
~TopologyListener() :
bpp::TopologyListener
~TopologySearch() :
bpp::TopologySearch
~TransitionFromTransitionModel() :
bpp::TransitionFromTransitionModel
~TransitionModelInterface() :
bpp::TransitionModelInterface
~Tree() :
bpp::Tree
~TreeDrawing() :
bpp::TreeDrawing
~TreeDrawingDisplayControler() :
bpp::TreeDrawingDisplayControler
~TreeDrawingNodeInfo() :
bpp::TreeDrawingNodeInfo
~TreeException() :
bpp::TreeException
~TreeIterator() :
bpp::TreeIterator
~TreeLikelihoodData() :
bpp::TreeLikelihoodData
~TreeLikelihoodInterface() :
bpp::TreeLikelihoodInterface
~TreeLikelihoodNodeData() :
bpp::TreeLikelihoodNodeData
~TreeLikelihoodTools() :
bpp::TreeLikelihoodTools
~TreeParsimonyDataInterface() :
bpp::TreeParsimonyDataInterface
~TreeParsimonyNodeDataInterface() :
bpp::TreeParsimonyNodeDataInterface
~TreeParsimonyScoreInterface() :
bpp::TreeParsimonyScoreInterface
~TreeTemplate() :
bpp::TreeTemplate< N >
~TreeTemplateTools() :
bpp::TreeTemplateTools
~TreeTools() :
bpp::TreeTools
~TripletSubstitutionModel() :
bpp::TripletSubstitutionModel
~TS98() :
bpp::TS98
~TwoParameterBinarySubstitutionModel() :
bpp::TwoParameterBinarySubstitutionModel
~UniformizationSubstitutionCount() :
bpp::UniformizationSubstitutionCount
~UnrootedPhyloTreeException() :
bpp::UnrootedPhyloTreeException
~UnrootedTreeException() :
bpp::UnrootedTreeException
~UserFrequencySet() :
bpp::UserFrequencySet
~UserProteinSubstitutionModel() :
bpp::UserProteinSubstitutionModel
~VectorOfSubstitutionRegisters() :
bpp::VectorOfSubstitutionRegisters
~WAG01() :
bpp::WAG01
~WordFromIndependentFrequencySet() :
bpp::WordFromIndependentFrequencySet
~WordFromUniqueFrequencySet() :
bpp::WordFromUniqueFrequencySet
~WordSubstitutionModel() :
bpp::WordSubstitutionModel
~WrappedModelInterface() :
bpp::WrappedModelInterface
~WrappedSubstitutionModelInterface() :
bpp::WrappedSubstitutionModelInterface
~WrappedTransitionModelInterface() :
bpp::WrappedTransitionModelInterface
~YN98() :
bpp::YN98
~YpR() :
bpp::YpR
~YpR_Gen() :
bpp::YpR_Gen
~YpR_Sym() :
bpp::YpR_Sym
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