bpp-phyl3 3.0.0
bpp::DRTreeLikelihoodTools Member List

This is the complete list of members for bpp::DRTreeLikelihoodTools, including all inherited members.

getAncestralFrequencies(const TreeLikelihoodInterface &tl, size_t site, std::map< int, std::vector< double > > &frequencies, bool alsoForLeaves=false)bpp::TreeLikelihoodToolsstatic
getAncestralFrequencies(const TreeLikelihoodInterface &tl, std::map< int, std::vector< double > > &frequencies, bool alsoForLeaves=false)bpp::TreeLikelihoodToolsstatic
getAncestralFrequencies_(const TreeLikelihoodInterface &tl, size_t siteIndex, int parentId, const std::vector< double > &ancestralFrequencies, std::map< int, std::vector< double > > &frequencies, bool alsoForLeaves)bpp::TreeLikelihoodToolsprivatestatic
getPosteriorProbabilitiesPerStatePerRate(const DRTreeLikelihoodInterface &drl, int nodeId)bpp::DRTreeLikelihoodToolsstatic
getPosteriorStateFrequencies(const DRTreeLikelihoodInterface &drl, int nodeId)bpp::DRTreeLikelihoodToolsstatic
TreeLikelihoodTools()bpp::TreeLikelihoodToolsinline
~TreeLikelihoodTools()bpp::TreeLikelihoodToolsinlinevirtual