bpp::LegacyProbabilisticSubstitutionMapping Member List

This is the complete list of members for bpp::LegacyProbabilisticSubstitutionMapping, including all inherited members.

clone() const override	bpp::LegacyProbabilisticSubstitutionMapping	inlinevirtual
bpp::getBranchLengths() const =0	bpp::LegacyMappingInterface	pure virtual
bpp::LegacyAbstractMapping::getBranchLengths() const override	bpp::LegacyAbstractMapping	inlinevirtual
getNode(size_t nodeIndex) const	bpp::LegacyAbstractMapping	inlinevirtual
bpp::getNodeIndex(int nodeId) const =0	bpp::LegacyMappingInterface	pure virtual
bpp::LegacyAbstractMapping::getNodeIndex(int nodeId) const override	bpp::LegacyAbstractMapping	inlinevirtual
bpp::getNumberOfBranches() const =0	bpp::LegacyMappingInterface	pure virtual
bpp::LegacyAbstractMapping::getNumberOfBranches() const override	bpp::LegacyAbstractMapping	inlinevirtual
bpp::getNumberOfSites() const =0	bpp::LegacyMappingInterface	pure virtual
bpp::LegacyAbstractMapping::getNumberOfSites() const override	bpp::LegacyAbstractMapping	inlinevirtual
getNumberOfSubstitutions(int nodeId, size_t siteIndex, size_t type) const	bpp::LegacyProbabilisticSubstitutionMapping	inline
getNumberOfSubstitutions(int nodeId, size_t siteIndex) const	bpp::LegacyProbabilisticSubstitutionMapping	inlinevirtual
getNumberOfSubstitutionTypes() const override	bpp::LegacyProbabilisticSubstitutionMapping	inlinevirtual
bpp::getSitePosition(size_t index) const =0	bpp::LegacyMappingInterface	pure virtual
bpp::LegacyAbstractMapping::getSitePosition(size_t index) const override	bpp::LegacyAbstractMapping	inlinevirtual
bpp::isEmpty() const =0	bpp::LegacyMappingInterface	pure virtual
bpp::LegacyAbstractMapping::isEmpty() const override	bpp::LegacyAbstractMapping	inlinevirtual
LegacyAbstractMapping(const Tree &tree)	bpp::LegacyAbstractMapping	inline
LegacyAbstractMapping(const LegacyAbstractMapping &absm)	bpp::LegacyAbstractMapping	inline
LegacyAbstractSubstitutionMapping(const Tree &tree)	bpp::LegacyAbstractSubstitutionMapping	inline
LegacyAbstractSubstitutionMapping(const LegacyAbstractSubstitutionMapping &absm)=default	bpp::LegacyAbstractSubstitutionMapping
LegacyMappingInterface()	bpp::LegacyMappingInterface	inline
LegacyProbabilisticSubstitutionMapping(const Tree &tree, std::shared_ptr< const SubstitutionCountInterface > sc, size_t numberOfSites)	bpp::LegacyProbabilisticSubstitutionMapping	inline
LegacyProbabilisticSubstitutionMapping(const Tree &tree)	bpp::LegacyProbabilisticSubstitutionMapping	inline
LegacyProbabilisticSubstitutionMapping(const LegacyProbabilisticSubstitutionMapping &psm)=default	bpp::LegacyProbabilisticSubstitutionMapping
LegacySubstitutionMappingInterface()	bpp::LegacySubstitutionMappingInterface	inline
mapping_	bpp::LegacyProbabilisticSubstitutionMapping	private
nbBranches_	bpp::LegacyAbstractMapping	private
nbSites_	bpp::LegacyAbstractMapping	private
nodes_	bpp::LegacyAbstractMapping	private
operator()(size_t nodeIndex, size_t siteIndex, size_t type) override	bpp::LegacyProbabilisticSubstitutionMapping	inlinevirtual
operator()(size_t nodeIndex, size_t siteIndex, size_t type) const override	bpp::LegacyProbabilisticSubstitutionMapping	inlinevirtual
operator=(const LegacyProbabilisticSubstitutionMapping &psm)=default	bpp::LegacyProbabilisticSubstitutionMapping
bpp::LegacyAbstractSubstitutionMapping::operator=(const LegacyAbstractSubstitutionMapping &absm)=default	bpp::LegacyAbstractSubstitutionMapping
bpp::LegacyAbstractMapping::operator=(const LegacyAbstractMapping &absm)	bpp::LegacyAbstractMapping	inline
operator[](size_t siteIndex)	bpp::LegacyProbabilisticSubstitutionMapping	inline
operator[](size_t siteIndex) const	bpp::LegacyProbabilisticSubstitutionMapping	inline
setNumberOfSites(size_t numberOfSites) override	bpp::LegacyProbabilisticSubstitutionMapping	virtual
bpp::setSitePosition(size_t index, int position)=0	bpp::LegacyMappingInterface	pure virtual
bpp::LegacyAbstractMapping::setSitePosition(size_t index, int position) override	bpp::LegacyAbstractMapping	inlinevirtual
setTree(const Tree &tree)	bpp::LegacyProbabilisticSubstitutionMapping	virtual
sitesPositions_	bpp::LegacyAbstractMapping	private
substitutionCount_	bpp::LegacyProbabilisticSubstitutionMapping	private
bpp::tree() const =0	bpp::LegacyMappingInterface	pure virtual
bpp::LegacyAbstractMapping::tree() const override	bpp::LegacyAbstractMapping	inlinevirtual
tree_	bpp::LegacyAbstractMapping	private
~Clonable()=default	bpp::Clonable	virtual
~LegacyAbstractMapping()	bpp::LegacyAbstractMapping	inlinevirtual
~LegacyAbstractSubstitutionMapping()	bpp::LegacyAbstractSubstitutionMapping	inlinevirtual
~LegacyMappingInterface()	bpp::LegacyMappingInterface	inlinevirtual
~LegacyProbabilisticSubstitutionMapping()	bpp::LegacyProbabilisticSubstitutionMapping	inlinevirtual
~LegacySubstitutionMappingInterface()	bpp::LegacySubstitutionMappingInterface	inlinevirtual