bpp-phyl3  3.0.0
bpp::PhyloTreeTools Member List

This is the complete list of members for bpp::PhyloTreeTools, including all inherited members.

bestRootPosition_(const PhyloTree &tree, const std::shared_ptr< PhyloNode > node1, const std::shared_ptr< PhyloNode > node2, double length)bpp::PhyloTreeToolsprivatestatic
BOOTSTRAPbpp::PhyloTreeToolsstatic
buildFromTreeTemplate(const TreeTemplate< Node > &treetemp)bpp::PhyloTreeToolsstatic
computeBranchLengthsGrafen(PhyloTree &tree, double power=1, bool init=true)bpp::PhyloTreeToolsstatic
computeBranchLengthsGrafen(PhyloTree &tree, std::shared_ptr< PhyloNode > node, double power, double total, double &height, double &heightRaised)bpp::PhyloTreeToolsprivatestatic
constrainedMidPointRooting(PhyloTree &tree)bpp::PhyloTreeToolsstatic
convertToClockTree(PhyloTree &tree, std::shared_ptr< PhyloNode > node)bpp::PhyloTreeToolsstatic
convertToClockTree2(PhyloTree &tree, std::shared_ptr< PhyloNode > node)bpp::PhyloTreeToolsstatic
getHeight(const PhyloTree &tree, const std::shared_ptr< PhyloNode > node)bpp::PhyloTreeToolsstatic
initBranchLengthsGrafen(PhyloTree &tree)bpp::PhyloTreeToolsstatic
initBranchLengthsGrafen(PhyloTree &tree, std::shared_ptr< PhyloNode > node)bpp::PhyloTreeToolsprivatestatic
PhyloTreeTools()bpp::PhyloTreeToolsinline
statFromNode_(const PhyloTree &tree, const std::shared_ptr< PhyloNode > root)bpp::PhyloTreeToolsprivatestatic
~PhyloTreeTools()bpp::PhyloTreeToolsinlinevirtual