bpp-phyl3
3.0.0
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This is the complete list of members for bpp::PhyloTreeTools, including all inherited members.
bestRootPosition_(const PhyloTree &tree, const std::shared_ptr< PhyloNode > node1, const std::shared_ptr< PhyloNode > node2, double length) | bpp::PhyloTreeTools | privatestatic |
BOOTSTRAP | bpp::PhyloTreeTools | static |
buildFromTreeTemplate(const TreeTemplate< Node > &treetemp) | bpp::PhyloTreeTools | static |
computeBranchLengthsGrafen(PhyloTree &tree, double power=1, bool init=true) | bpp::PhyloTreeTools | static |
computeBranchLengthsGrafen(PhyloTree &tree, std::shared_ptr< PhyloNode > node, double power, double total, double &height, double &heightRaised) | bpp::PhyloTreeTools | privatestatic |
constrainedMidPointRooting(PhyloTree &tree) | bpp::PhyloTreeTools | static |
convertToClockTree(PhyloTree &tree, std::shared_ptr< PhyloNode > node) | bpp::PhyloTreeTools | static |
convertToClockTree2(PhyloTree &tree, std::shared_ptr< PhyloNode > node) | bpp::PhyloTreeTools | static |
getHeight(const PhyloTree &tree, const std::shared_ptr< PhyloNode > node) | bpp::PhyloTreeTools | static |
initBranchLengthsGrafen(PhyloTree &tree) | bpp::PhyloTreeTools | static |
initBranchLengthsGrafen(PhyloTree &tree, std::shared_ptr< PhyloNode > node) | bpp::PhyloTreeTools | privatestatic |
PhyloTreeTools() | bpp::PhyloTreeTools | inline |
statFromNode_(const PhyloTree &tree, const std::shared_ptr< PhyloNode > root) | bpp::PhyloTreeTools | privatestatic |
~PhyloTreeTools() | bpp::PhyloTreeTools | inlinevirtual |