bpp::SubstitutionDistance Member List

This is the complete list of members for bpp::SubstitutionDistance, including all inherited members.

clone() const =0	bpp::SubstitutionCountInterface	pure virtual
getAllNumbersOfSubstitutions(double length, size_t type) const =0	bpp::SubstitutionCountInterface	pure virtual
getAlphabet() const	bpp::SubstitutionCountInterface	inlinevirtual
getDistances() const =0	bpp::SubstitutionDistance	pure virtual
getNumberOfStates() const	bpp::SubstitutionCountInterface	inlinevirtual
getNumberOfSubstitutions(size_t initialState, size_t finalState, double length, size_t type) const =0	bpp::SubstitutionCountInterface	pure virtual
getNumberOfSubstitutionsPerType(size_t initialState, size_t finalState, double length) const =0	bpp::SubstitutionCountInterface	pure virtual
getNumberOfSubstitutionTypes() const	bpp::SubstitutionCountInterface	inlinevirtual
getSubstitutionRegister() const =0	bpp::SubstitutionCountInterface	pure virtual
hasDistances() const =0	bpp::SubstitutionDistance	pure virtual
hasSubstitutionRegister() const =0	bpp::SubstitutionCountInterface	pure virtual
setDistances(std::shared_ptr< const AlphabetIndex2 > index)=0	bpp::SubstitutionDistance	pure virtual
setSubstitutionModel(std::shared_ptr< const SubstitutionModelInterface > model)=0	bpp::SubstitutionCountInterface	pure virtual
setSubstitutionRegister(std::shared_ptr< const SubstitutionRegisterInterface > reg)=0	bpp::SubstitutionCountInterface	pure virtual
storeAllNumbersOfSubstitutions(double length, size_t type, Eigen::MatrixXd &mat) const =0	bpp::SubstitutionCountInterface	pure virtual
SubstitutionCountInterface()	bpp::SubstitutionCountInterface	inline
~Clonable()=default	bpp::Clonable	virtual
~SubstitutionCountInterface()	bpp::SubstitutionCountInterface	inlinevirtual