- Generated on Fri Jul 19 2024 11:49:29 for bpp-phyl3 by
1.9.1
|
bpp-phyl3
3.0.0
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This is the complete list of members for bpp::Tree, including all inherited members.
| clone() const =0 | bpp::Tree | pure virtual |
| cloneSubtree(int newRootId) const =0 | bpp::Tree | pure virtual |
| deleteDistanceToFather(int nodeId)=0 | bpp::Tree | pure virtual |
| deleteNodeName(int nodeId)=0 | bpp::Tree | pure virtual |
| getAncestorsId(int nodeId) const =0 | bpp::Tree | pure virtual |
| getBranchesId() const =0 | bpp::Tree | pure virtual |
| getBranchLengths() const =0 | bpp::Tree | pure virtual |
| getBranchLengths()=0 | bpp::Tree | pure virtual |
| getBranchProperty(int nodeId, const std::string &name)=0 | bpp::Tree | pure virtual |
| getBranchProperty(int nodeId, const std::string &name) const =0 | bpp::Tree | pure virtual |
| getBranchPropertyNames(int nodeId) const =0 | bpp::Tree | pure virtual |
| getDistanceToFather(int nodeId) const =0 | bpp::Tree | pure virtual |
| getFatherId(int parentId) const =0 | bpp::Tree | pure virtual |
| getInnerNodesId() const =0 | bpp::Tree | pure virtual |
| getLeafId(const std::string &name) const =0 | bpp::Tree | pure virtual |
| getLeavesId() const =0 | bpp::Tree | pure virtual |
| getLeavesNames() const =0 | bpp::Tree | pure virtual |
| getName() const =0 | bpp::Tree | pure virtual |
| getNextId()=0 | bpp::Tree | pure virtual |
| getNodeName(int nodeId) const =0 | bpp::Tree | pure virtual |
| getNodeProperty(int nodeId, const std::string &name)=0 | bpp::Tree | pure virtual |
| getNodeProperty(int nodeId, const std::string &name) const =0 | bpp::Tree | pure virtual |
| getNodePropertyNames(int nodeId) const =0 | bpp::Tree | pure virtual |
| getNodesId() const =0 | bpp::Tree | pure virtual |
| getNumberOfBranches() const =0 | bpp::Tree | pure virtual |
| getNumberOfLeaves() const =0 | bpp::Tree | pure virtual |
| getNumberOfNodes() const =0 | bpp::Tree | pure virtual |
| getRootId() const =0 | bpp::Tree | pure virtual |
| getSonsId(int parentId) const =0 | bpp::Tree | pure virtual |
| getTotalLength()=0 | bpp::Tree | pure virtual |
| hasBranchProperty(int nodeId, const std::string &name) const =0 | bpp::Tree | pure virtual |
| hasDistanceToFather(int nodeId) const =0 | bpp::Tree | pure virtual |
| hasFather(int nodeId) const =0 | bpp::Tree | pure virtual |
| hasNode(int nodeId) const =0 | bpp::Tree | pure virtual |
| hasNodeName(int nodeId) const =0 | bpp::Tree | pure virtual |
| hasNodeProperty(int nodeId, const std::string &name) const =0 | bpp::Tree | pure virtual |
| hasNoSon(int nodeId) const =0 | bpp::Tree | pure virtual |
| isLeaf(int nodeId) const =0 | bpp::Tree | pure virtual |
| isMultifurcating() const =0 | bpp::Tree | pure virtual |
| isRoot(int nodeId) const =0 | bpp::Tree | pure virtual |
| isRooted() const =0 | bpp::Tree | pure virtual |
| newOutGroup(int nodeId)=0 | bpp::Tree | pure virtual |
| removeBranchProperty(int nodeId, const std::string &name)=0 | bpp::Tree | pure virtual |
| removeNodeProperty(int nodeId, const std::string &name)=0 | bpp::Tree | pure virtual |
| resetNodesId()=0 | bpp::Tree | pure virtual |
| rootAt(int nodeId)=0 | bpp::Tree | pure virtual |
| scaleTree(double factor)=0 | bpp::Tree | pure virtual |
| setBranchLengths(double brLen)=0 | bpp::Tree | pure virtual |
| setBranchProperty(int nodeId, const std::string &name, const Clonable &property)=0 | bpp::Tree | pure virtual |
| setDistanceToFather(int nodeId, double length)=0 | bpp::Tree | pure virtual |
| setName(const std::string &name)=0 | bpp::Tree | pure virtual |
| setNodeName(int nodeId, const std::string &name)=0 | bpp::Tree | pure virtual |
| setNodeProperty(int nodeId, const std::string &name, const Clonable &property)=0 | bpp::Tree | pure virtual |
| setVoidBranchLengths(double brLen)=0 | bpp::Tree | pure virtual |
| swapNodes(const Tree &tree, int nodeId, size_t i1=0, size_t i2=1) | bpp::Tree | |
| Tree() | bpp::Tree | inline |
| unroot()=0 | bpp::Tree | pure virtual |
| ~Clonable()=default | bpp::Clonable | virtual |
| ~Tree() | bpp::Tree | inlinevirtual |
1.9.1