Partial implementation of the IDAG interface. More...

#include <Bpp/Phyl/Io/IoDAG.h>

Inheritance diagram for bpp::AbstractIPhyloDAG:

Collaboration diagram for bpp::AbstractIPhyloDAG:

Public Member Functions
	AbstractIPhyloDAG ()

virtual	~AbstractIPhyloDAG ()

std::unique_ptr< PhyloDAG >	readPhyloDAG (std::istream &in) const override=0
	Read a DAG from a stream. More...

std::unique_ptr< PhyloDAG >	readPhyloDAG (const std::string &path) const override
	Read a DAG from a file. More...

virtual Element	getElement (const std::string &elt) const

virtual const std::string	getDataType () const

virtual const std::string	getFormatName () const=0

virtual const std::string	getFormatDescription () const=0

Detailed Description

Partial implementation of the IDAG interface.

Definition at line 119 of file IoDAG.h.

Constructor & Destructor Documentation

◆ AbstractIPhyloDAG()

bpp::AbstractIPhyloDAG::AbstractIPhyloDAG ( )

inline

Definition at line 123 of file IoDAG.h.

◆ ~AbstractIPhyloDAG()

virtual bpp::AbstractIPhyloDAG::~AbstractIPhyloDAG ( )

inlinevirtual

Definition at line 124 of file IoDAG.h.

Member Function Documentation

◆ getDataType()

virtual const std::string bpp::IODAG::getDataType ( ) const

inlinevirtualinherited

Implements bpp::IOFormat.

Definition at line 48 of file IoDAG.h.

◆ getElement()

virtual Element bpp::AbstractIPhyloDAG::getElement ( const std::string & elt ) const

inlinevirtual

Reimplemented in bpp::ExtendedNewick.

Definition at line 139 of file IoDAG.h.

◆ readPhyloDAG() [1/2]

std::unique_ptr< PhyloDAG > bpp::AbstractIPhyloDAG::readPhyloDAG ( const std::string & path ) const

inlineoverridevirtual

Read a DAG from a file.

Parameters

path	The file path.

Returns: a new PhyloDAG object.

Implements bpp::IPhyloDAG.

Reimplemented in bpp::ExtendedNewick.

Definition at line 129 of file IoDAG.h.

References readPhyloDAG().

◆ readPhyloDAG() [2/2]

std::unique_ptr< PhyloDAG > bpp::AbstractIPhyloDAG::readPhyloDAG ( std::istream & in ) const

overridepure virtual

Read a DAG from a stream.