#include <Bpp/Phyl/Likelihood/DataFlow/Parametrizable.h>

Static Public Member Functions
template<typename Object , typename Self >
static std::shared_ptr< Self >	createConfigured (Context &c, NodeRefVec &&deps, std::unique_ptr< Object > &&object, typename std::enable_if< std::is_base_of< ParameterAliasable, Object >::value >::type *=0)
	Create a new node to an Aliased Parameterized object from a dependency vector of Independent Parameters (which are already Configure). More...

template<typename Object , typename Self >
static std::shared_ptr< Self >	createConfigured (Context &c, NodeRefVec &&deps, std::unique_ptr< Object > &&object, typename std::enable_if<!std::is_base_of< ParameterAliasable, Object >::value >::type *=0)
	Create a new node to a Parameterized object from a dependency vector of Parameters (which are already Configured). More...

template<typename Object , typename Self >
static std::shared_ptr< Self >	createConfigured (Context &context, std::unique_ptr< Object > &&object)
	Create a new node to a Parameterized object ConfiguredParameters are built from its set of independent Parameters. More...

template<typename Object , typename Self >
static std::shared_ptr< Self >	createConfigured (Context &context, const Object &object, ParameterList &parList, const std::string &suff="")
	Create a new node from a clonable object. Object parameters are get from ConfiguredParameters PREVIOUSLY built and stored in a ParameterList. More...

template<typename ConfiguredObject , typename Self >
static ValueRef< double >	createDouble (Context &c, NodeRefVec &&deps)

template<typename ConfiguredObject , typename Self , typename Row >
static ValueRef< Row >	createRowVector (Context &c, NodeRefVec &&deps, const Dimension< Row > &dim)

template<typename ConfiguredObject , typename Self , typename Col >
static ValueRef< Col >	createVector (Context &c, NodeRefVec &&deps, const Dimension< Col > &dim)

template<typename ConfiguredObject , typename Self , typename Matrix >
static ValueRef< Matrix >	createMatrix (Context &c, NodeRefVec &&deps, const Dimension< Matrix > &dim)

template<typename ConfiguredObject , typename T , typename B >
static NodeRefVec	generateDerivativeSumDepsForComputations (Context &c, ConfiguredObject &object, const Node_DF &derivationNode, const Dimension< T > &targetDimension, B buildFWithNewObject)

Detailed Description

Definition at line 47 of file Parametrizable.h.

Member Function Documentation

◆ createConfigured() [1/4]

template<typename Object , typename Self >

static std::shared_ptr<Self> bpp::ConfiguredParametrizable::createConfigured	(	Context &	c,
		NodeRefVec &&	deps,
		std::unique_ptr< Object > &&	object,
		typename std::enable_if< std::is_base_of< ParameterAliasable, Object >::value >::type *	= `0`
	)

inlinestatic

Create a new node to an Aliased Parameterized object from a dependency vector of Independent Parameters (which are already Configure).

Object parameters are given by a dependency vector of Value<double> nodes. The number and order of parameters is given by the Object internal ParameterList.

Definition at line 60 of file Parametrizable.h.

References bpp::checkDependenciesNotNull(), and bpp::checkDependencyVectorSize().

◆ createConfigured() [2/4]

template<typename Object , typename Self >

static std::shared_ptr<Self> bpp::ConfiguredParametrizable::createConfigured	(	Context &	c,
		NodeRefVec &&	deps,
		std::unique_ptr< Object > &&	object,
		typename std::enable_if<!std::is_base_of< ParameterAliasable, Object >::value >::type *	= `0`
	)

inlinestatic

Create a new node to a Parameterized object from a dependency vector of Parameters (which are already Configured).

Object parameters are given by a dependency vector of Value<double> nodes. The number and order of parameters is given by the Object internal ParameterList.

Definition at line 86 of file Parametrizable.h.

References bpp::checkDependenciesNotNull(), and bpp::checkDependencyVectorSize().

◆ createConfigured() [3/4]

template<typename Object , typename Self >

static std::shared_ptr<Self> bpp::ConfiguredParametrizable::createConfigured	(	Context &	context,
		const Object &	object,
		ParameterList &	parList,
		const std::string &	suff = `""`
	)

inlinestatic

Create a new node from a clonable object. Object parameters are get from ConfiguredParameters PREVIOUSLY built and stored in a ParameterList.

Parameters

context
object	: Object which will be cloned to the node.
parList	list of the ConfiguredParameters previously built
suff	optional suffix for the parameter name, in the context of a full DataFlow

Definition at line 136 of file Parametrizable.h.

References bpp::ConfiguredParameter::create(), bpp::ParameterList::getParameter(), bpp::ParameterList::hasParameter(), and bpp::ParameterList::size().

◆ createConfigured() [4/4]

template<typename Object , typename Self >

static std::shared_ptr<Self> bpp::ConfiguredParametrizable::createConfigured	(	Context &	context,
		std::unique_ptr< Object > &&	object
	)

inlinestatic

Create a new node to a Parameterized object ConfiguredParameters are built from its set of independent Parameters.

Definition at line 109 of file Parametrizable.h.

References bpp::createDependencyVector(), and bpp::createParameterMap().

◆ createDouble()

template<typename ConfiguredObject , typename Self >

static ValueRef<double> bpp::ConfiguredParametrizable::createDouble	(	Context &	c,
		NodeRefVec &&	deps
	)

inlinestatic

Create a new vector of dependencies node to a double, through a inheriting class (aka Self), from a ConfiguredObject

Definition at line 171 of file Parametrizable.h.

References bpp::checkDependenciesNotNull(), and bpp::checkDependencyVectorSize().

◆ createMatrix()

template<typename ConfiguredObject , typename Self , typename Matrix >

static ValueRef<Matrix> bpp::ConfiguredParametrizable::createMatrix	(	Context &	c,
		NodeRefVec &&	deps,
		const Dimension< Matrix > &	dim
	)

inlinestatic

Create a new vector of dependencies node to a MatrixXd, through a inheriting class (aka Self), from a ConfiguredObject and an optional ConfiguredParameter (ie branch length)

Definition at line 215 of file Parametrizable.h.

References bpp::checkDependencyVectorMinSize(), and bpp::checkNthDependencyNotNull().

◆ createRowVector()

template<typename ConfiguredObject , typename Self , typename Row >

static ValueRef<Row> bpp::ConfiguredParametrizable::createRowVector	(	Context &	c,
		NodeRefVec &&	deps,
		const Dimension< Row > &	dim
	)

inlinestatic

Create a new vector of dependencies node to a RowVectorXd, through a inheriting class (aka Self), from a ConfiguredObject

Additional dependencies are allowed

Definition at line 188 of file Parametrizable.h.

References bpp::checkDependencyVectorMinSize(), and bpp::checkNthDependencyNotNull().

◆ createVector()

template<typename ConfiguredObject , typename Self , typename Col >

static ValueRef<Col> bpp::ConfiguredParametrizable::createVector	(	Context &	c,
		NodeRefVec &&	deps,
		const Dimension< Col > &	dim
	)

inlinestatic

Definition at line 199 of file Parametrizable.h.

References bpp::checkDependencyVectorMinSize(), and bpp::checkNthDependencyNotNull().

◆ generateDerivativeSumDepsForComputations()

template<typename ConfiguredObject , typename T , typename B >

static NodeRefVec bpp::ConfiguredParametrizable::generateDerivativeSumDepsForComputations	(	Context &	c,
		ConfiguredObject &	object,
		const Node_DF &	derivationNode,
		const Dimension< T > &	targetDimension,
		B	buildFWithNewObject
	)

inlinestatic

Definition at line 241 of file Parametrizable.h.

References bpp::ConstantOne, and bpp::ConstantZero.

The documentation for this class was generated from the following file:

Bpp/Phyl/Likelihood/DataFlow/Parametrizable.h

Static Public Member Functions

Detailed Description

Member Function Documentation

◆ createConfigured() [1/4]

◆ createConfigured() [2/4]

◆ createConfigured() [3/4]

◆ createConfigured() [4/4]

◆ createDouble()

◆ createMatrix()

◆ createRowVector()

◆ createVector()

◆ generateDerivativeSumDepsForComputations()