bpp::RASTools Class Reference

Tools to deal with Rates Across Sites (RAS) models. More...

#include <Bpp/Phyl/Legacy/Likelihood/RASTools.h>

Static Public Member Functions
static std::unique_ptr< DiscreteDistributionInterface >	getPosteriorRateDistribution (const DiscreteRatesAcrossSitesTreeLikelihoodInterface &treeLikelihood)
	Get the rate distribution estimated from a dataset. More...

Detailed Description

Tools to deal with Rates Across Sites (RAS) models.

Definition at line 17 of file RASTools.h.

Member Function Documentation

getPosteriorRateDistribution()

unique_ptr< DiscreteDistributionInterface > RASTools::getPosteriorRateDistribution ( const DiscreteRatesAcrossSitesTreeLikelihoodInterface &  treeLikelihood )

static

Get the rate distribution estimated from a dataset.

This methods takes an object implementing the DiscreteRatesAcroossSites interface as input and use the posterior probabilities of rates for each site to generate the corresponding distribution.

Parameters

treeLikelihood

A Likelihood calculation implementing the RAS model interface.

Returns

The posterior distribution of rate classes.

Definition at line 16 of file RASTools.cpp.

References bpp::DiscreteRatesAcrossSitesTreeLikelihoodInterface::getRateClassWithMaxPostProbPerSite(), and bpp::DiscreteRatesAcrossSitesTreeLikelihoodInterface::getRateDistribution().

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The documentation for this class was generated from the following files:

• Bpp/Phyl/Legacy/Likelihood/RASTools.h
• Bpp/Phyl/Legacy/Likelihood/RASTools.cpp