This interface describes the substitution process along the tree and sites of the alignment. More...

#include <Bpp/Phyl/Likelihood/SubstitutionProcess.h>

Inheritance diagram for bpp::SubstitutionProcessInterface:

Collaboration diagram for bpp::SubstitutionProcessInterface:

Public Member Functions
virtual SubstitutionProcessInterface *	clone () const =0

virtual const StateMapInterface &	stateMap () const =0

virtual std::shared_ptr< const StateMapInterface >	getStateMap () const =0

virtual bool	isCompatibleWith (const AlignmentDataInterface &data) const =0

virtual const ParametrizablePhyloTree &	parametrizablePhyloTree () const =0

virtual std::shared_ptr< const ParametrizablePhyloTree >	getParametrizablePhyloTree () const =0

virtual size_t	getNumberOfClasses () const =0

virtual size_t	getNumberOfStates () const =0

virtual size_t	getNumberOfModels () const =0

virtual std::vector< size_t >	getModelNumbers () const =0

virtual const BranchModelInterface &	model (size_t i) const =0

virtual std::shared_ptr< const BranchModelInterface >	getModel (size_t i) const =0

virtual const BranchModelInterface &	model (unsigned int nodeId, size_t classIndex) const =0
	Get the substitution model corresponding to a certain branch, site pattern, and model class. More...

virtual std::shared_ptr< const BranchModelInterface >	getModel (unsigned int nodeId, size_t classIndex) const =0
	Get the substitution model corresponding to a certain branch, site pattern, and model class. More...

virtual std::shared_ptr< const ModelScenario >	getModelScenario () const =0
	Get the Model Scenario associated with this process, in case there are mixture models involved. More...

virtual const std::vector< unsigned int >	getNodesWithModel (size_t i) const =0
	Get a list of nodes id for which the given model is associated. More...

virtual size_t	getModelNumberForNode (unsigned int nodeId) const =0
	Get the number of the model associated to a particular node id. More...

virtual std::shared_ptr< const BranchModelInterface >	getModelForNode (unsigned int nodeId) const =0
	Get the model associated to a particular node id. More...

virtual const DiscreteDistributionInterface &	rateDistribution () const =0
	Get the rate distribution. More...

virtual DiscreteDistributionInterface &	rateDistribution ()=0
	Get the rate distribution. More...

virtual std::shared_ptr< const DiscreteDistributionInterface >	getRateDistribution () const =0
	Get a pointer to the rate distribution (or null if there is no rate distribution). More...

virtual std::shared_ptr< DiscreteDistributionInterface >	getRateDistribution ()=0
	Get a pointer to the rate distribution (or null if there is no rate distribution). More...

virtual ParameterList	getSubstitutionModelParameters (bool independent) const =0
	Methods to retrieve the parameters of specific objects. More...

virtual ParameterList	getRateDistributionParameters (bool independent) const =0

virtual ParameterList	getRootFrequenciesParameters (bool independent) const =0

virtual ParameterList	getBranchLengthParameters (bool independent) const =0

virtual ParameterList	getNonDerivableParameters () const =0

virtual const std::vector< double > &	getRootFrequencies () const =0
	Get the values of the frequencies for each state in the alphabet at the root node. More...

virtual bool	hasRootFrequencySet () const =0

virtual const FrequencySetInterface &	rootFrequencySet () const =0

virtual std::shared_ptr< const FrequencySetInterface >	getRootFrequencySet () const =0

virtual FrequencySetInterface &	rootFrequencySet ()=0

virtual std::shared_ptr< FrequencySetInterface >	getRootFrequencySet ()=0

virtual double	getProbabilityForModel (size_t classIndex) const =0

virtual Vdouble	getClassProbabilities () const =0

virtual double	getRateForModel (size_t classIndex) const =0

virtual size_t	getNumberOfIndependentParameters () const=0

virtual void	aliasParameters (const std::string &p1, const std::string &p2)=0

virtual void	aliasParameters (std::map< std::string, std::string > &unparsedParams, bool verbose)=0

virtual void	unaliasParameters (const std::string &p1, const std::string &p2)=0

virtual const ParameterList &	getIndependentParameters () const=0

virtual std::vector< std::string >	getAlias (const std::string &name) const=0

virtual std::map< std::string, std::string >	getAliases () const=0

virtual bool	hasParameter (const std::string &name) const=0

virtual const ParameterList &	getParameters () const=0

virtual const Parameter &	parameter (const std::string &name) const=0

virtual double	getParameterValue (const std::string &name) const=0

virtual void	setAllParametersValues (const ParameterList &parameters)=0

virtual void	setParameterValue (const std::string &name, double value)=0

virtual void	setParametersValues (const ParameterList &parameters)=0

virtual bool	matchParametersValues (const ParameterList &parameters)=0

virtual void	removeConstraint (const std::string &name)=0

virtual void	setConstraint (const std::string &name, std::shared_ptr< ConstraintInterface > constraint)=0

virtual size_t	getNumberOfParameters () const=0

virtual void	setNamespace (const std::string &prefix)=0

virtual std::string	getNamespace () const=0

virtual std::string	getParameterNameWithoutNamespace (const std::string &name) const=0

Protected Member Functions
virtual ParameterList &	getParameters_ ()=0

Detailed Description

This interface describes the substitution process along the tree and sites of the alignment.

It main purpose is to provide the necessary calculus for each branch-site-model class combination, such as Markov generator and transition probabilities. These are typically provided by a BranchModel class, applied in various combination along the tree (eg non-homogeneous models) and alignment (eg partition models). The so-called "model class" refers to mixture models.

An instance of the SubstitutionProcess class is always associated to an instance of a ParametrizableTree. The substitution process is in charge of computing the transition probabilities for each branch of the tree, and to update them in case a parameter (including branch length) changes.

As several branches and sites can share the same generator/transition probabilities, calling these values and therefore performing the underlying calculation for each branch-site can result in a very unefficient code. Therefore, "model iterators" are provided, to allow smarter loops over the model structure, by minimizing the amount of computation to be done. Such iterator allow to loop over branches and sites in a clever way, through both directions, but do not perform any calculations. These are achieved through calls to the corresponding SubstitutionProcess class.

Definition at line 45 of file SubstitutionProcess.h.

Member Function Documentation

◆ clone()

virtual SubstitutionProcessInterface* bpp::SubstitutionProcessInterface::clone ( ) const

pure virtual

Implements bpp::ParameterAliasable.

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

Referenced by bpp::OptimizationTools::buildDistanceTree().

◆ getBranchLengthParameters()

virtual ParameterList bpp::SubstitutionProcessInterface::getBranchLengthParameters ( bool independent ) const

pure virtual

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

Referenced by bpp::SingleProcessPhyloLikelihood::getBranchLengthParameters(), and bpp::SingleProcessPhyloLikelihood::getDerivableParameters().

◆ getClassProbabilities()

virtual Vdouble bpp::SubstitutionProcessInterface::getClassProbabilities ( ) const

pure virtual

Returns: The vector of the probabilities associated to the classes.

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

◆ getModel() [1/2]

virtual std::shared_ptr<const BranchModelInterface> bpp::SubstitutionProcessInterface::getModel ( size_t i ) const

pure virtual

Returns: A shared pointer toward the model with given index.

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

Referenced by bpp::makeConfiguredModelCollection().

◆ getModel() [2/2]

virtual std::shared_ptr<const BranchModelInterface> bpp::SubstitutionProcessInterface::getModel	(	unsigned int	nodeId,
		size_t	classIndex
	)		const

pure virtual

Get the substitution model corresponding to a certain branch, site pattern, and model class.

Parameters

nodeId	The id of the node.
classIndex	The model class index.

Returns: A shared pointer toward the model with given index.

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

◆ getModelForNode()

virtual std::shared_ptr<const BranchModelInterface> bpp::SubstitutionProcessInterface::getModelForNode ( unsigned int nodeId ) const

pure virtual

Get the model associated to a particular node id.

Parameters

nodeId The id of the query node.

Returns: A pointer toward the corresponding model.

Exceptions

Exception If no model is found for this node.

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

◆ getModelNumberForNode()

virtual size_t bpp::SubstitutionProcessInterface::getModelNumberForNode ( unsigned int nodeId ) const

pure virtual

Get the number of the model associated to a particular node id.

Parameters

nodeId The id of the query node.

Returns: The number of the model associated to the given node.

Exceptions

Exception If no model is found for this node.

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

◆ getModelNumbers()

virtual std::vector<size_t> bpp::SubstitutionProcessInterface::getModelNumbers ( ) const

pure virtual

Returns: The current indexes of models used in the process

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

Referenced by bpp::makeConfiguredModelCollection(), bpp::OneProcessSequenceSubstitutionMapping::setBranchedModelSet_(), and bpp::SingleProcessSubstitutionMapping::setBranchedModelSet_().

◆ getModelScenario()

virtual std::shared_ptr<const ModelScenario> bpp::SubstitutionProcessInterface::getModelScenario ( ) const

pure virtual

Get the Model Scenario associated with this process, in case there are mixture models involved.

When a mixture model is not included in the ModelScenario, it is considered as non-mixed (transition probabilities are then computed as mixture of submodel transition probalities).

It returns 0 if there is no model path, which means that all mixture models are considered as non-mixed.

Implemented in bpp::SubstitutionProcessCollectionMember, and bpp::AbstractAutonomousSubstitutionProcess.

◆ getNodesWithModel()

virtual const std::vector<unsigned int> bpp::SubstitutionProcessInterface::getNodesWithModel ( size_t i ) const

pure virtual

Get a list of nodes id for which the given model is associated.

Parameters

i	The index of the model in the set.

Returns: A vector with the ids of the node associated to this model.

Exceptions

IndexOutOfBoundsException If the index is not valid.

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

Referenced by bpp::OneProcessSequenceSubstitutionMapping::setBranchedModelSet_(), and bpp::SingleProcessSubstitutionMapping::setBranchedModelSet_().

◆ getNonDerivableParameters()

virtual ParameterList bpp::SubstitutionProcessInterface::getNonDerivableParameters ( ) const

pure virtual

Implemented in bpp::SubstitutionProcessCollectionMember, and bpp::AbstractSubstitutionProcess.

Referenced by bpp::SingleProcessPhyloLikelihood::getNonDerivableParameters().

◆ getNumberOfClasses()

virtual size_t bpp::SubstitutionProcessInterface::getNumberOfClasses ( ) const

pure virtual

Implemented in bpp::AbstractSubstitutionProcess.

Referenced by bpp::RewardMappingTools::computeRewardVectors(), and bpp::SingleProcessPhyloLikelihood::getNumberOfClasses().

◆ getNumberOfModels()

virtual size_t bpp::SubstitutionProcessInterface::getNumberOfModels ( ) const

pure virtual

Returns: The current number of distinct models.

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

◆ getNumberOfStates()

virtual size_t bpp::SubstitutionProcessInterface::getNumberOfStates ( ) const

pure virtual

Implemented in bpp::AbstractSubstitutionProcess.

◆ getParametrizablePhyloTree()

virtual std::shared_ptr<const ParametrizablePhyloTree> bpp::SubstitutionProcessInterface::getParametrizablePhyloTree ( ) const

pure virtual

Implemented in bpp::SubstitutionProcessCollectionMember, and bpp::AbstractAutonomousSubstitutionProcess.

Referenced by bpp::RewardMappingTools::computeRewardVectors(), bpp::SubstitutionProcessSequenceSimulator::SubstitutionProcessSequenceSimulator(), and bpp::SingleProcessPhyloLikelihood::tree().

◆ getProbabilityForModel()

virtual double bpp::SubstitutionProcessInterface::getProbabilityForModel ( size_t classIndex ) const

pure virtual

Returns: The probability associated to the given model class.

Parameters

classIndex The model class index.

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

Referenced by bpp::RewardMappingTools::computeRewardVectors().

◆ getRateDistribution() [1/2]

virtual std::shared_ptr<const DiscreteDistributionInterface> bpp::SubstitutionProcessInterface::getRateDistribution ( ) const

pure virtual

Get a pointer to the rate distribution (or null if there is no rate distribution).

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

Referenced by bpp::AbstractSubstitutionProcess::getNumberOfClasses().

◆ getRateDistribution() [2/2]

virtual std::shared_ptr<DiscreteDistributionInterface> bpp::SubstitutionProcessInterface::getRateDistribution ( )

pure virtual

Get a pointer to the rate distribution (or null if there is no rate distribution).

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

◆ getRateDistributionParameters()

virtual ParameterList bpp::SubstitutionProcessInterface::getRateDistributionParameters ( bool independent ) const

pure virtual

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

Referenced by bpp::OptimizationTools::buildDistanceTree(), bpp::OptimizationTools::estimateDistanceMatrix(), and bpp::SingleProcessPhyloLikelihood::getRateDistributionParameters().

◆ getRateForModel()

virtual double bpp::SubstitutionProcessInterface::getRateForModel ( size_t classIndex ) const

pure virtual

Returns: The substitution rate associated to the given model class.

Parameters

classIndex The model class index.

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

◆ getRootFrequencies()

virtual const std::vector<double>& bpp::SubstitutionProcessInterface::getRootFrequencies ( ) const

pure virtual

Get the values of the frequencies for each state in the alphabet at the root node.

For reversible models, these are the equilibrium frequencies. For non-reversible models, these usually are distinct parameters.

Returns: A vector with ancestral frequencies for each state in the alphabet;

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

◆ getRootFrequenciesParameters()

virtual ParameterList bpp::SubstitutionProcessInterface::getRootFrequenciesParameters ( bool independent ) const

pure virtual

Implemented in bpp::SubstitutionProcessCollectionMember, and bpp::AbstractAutonomousSubstitutionProcess.

Referenced by bpp::OptimizationTools::buildDistanceTree(), bpp::OptimizationTools::estimateDistanceMatrix(), and bpp::SingleProcessPhyloLikelihood::getRootFrequenciesParameters().

◆ getRootFrequencySet() [1/2]

virtual std::shared_ptr<const FrequencySetInterface> bpp::SubstitutionProcessInterface::getRootFrequencySet ( ) const

pure virtual

Returns: A pointer toward rhe set of parametrized root frequencies.

Implemented in bpp::SubstitutionProcessCollectionMember, and bpp::AbstractAutonomousSubstitutionProcess.

◆ getRootFrequencySet() [2/2]

virtual std::shared_ptr<FrequencySetInterface> bpp::SubstitutionProcessInterface::getRootFrequencySet ( )

pure virtual

Returns: A pointer toward rhe set of parametrized root frequencies.

Implemented in bpp::SubstitutionProcessCollectionMember, and bpp::AbstractAutonomousSubstitutionProcess.

◆ getStateMap()

virtual std::shared_ptr<const StateMapInterface> bpp::SubstitutionProcessInterface::getStateMap ( ) const

pure virtual

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

Referenced by bpp::SequenceEvolution::getStateMap().

◆ getSubstitutionModelParameters()

virtual ParameterList bpp::SubstitutionProcessInterface::getSubstitutionModelParameters ( bool independent ) const

pure virtual

Methods to retrieve the parameters of specific objects.

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

Referenced by bpp::OptimizationTools::buildDistanceTree(), bpp::OptimizationTools::estimateDistanceMatrix(), and bpp::SingleProcessPhyloLikelihood::getSubstitutionModelParameters().

◆ hasRootFrequencySet()

virtual bool bpp::SubstitutionProcessInterface::hasRootFrequencySet ( ) const

pure virtual

Returns: true if the process has parametrized root frequencies (non-stationary model)

Implemented in bpp::SubstitutionProcessCollectionMember, and bpp::AbstractAutonomousSubstitutionProcess.

◆ isCompatibleWith()

virtual bool bpp::SubstitutionProcessInterface::isCompatibleWith ( const AlignmentDataInterface & data ) const

pure virtual

Implemented in bpp::AbstractSubstitutionProcess.

◆ model() [1/2]

virtual const BranchModelInterface& bpp::SubstitutionProcessInterface::model ( size_t i ) const

pure virtual

Returns: the model with given index.

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

Referenced by bpp::PhylogeneticsApplicationTools::printParameters(), bpp::OneProcessSequenceSubstitutionMapping::setBranchedModelSet_(), and bpp::SingleProcessSubstitutionMapping::setBranchedModelSet_().

◆ model() [2/2]

virtual const BranchModelInterface& bpp::SubstitutionProcessInterface::model	(	unsigned int	nodeId,
		size_t	classIndex
	)		const

pure virtual

Get the substitution model corresponding to a certain branch, site pattern, and model class.

Parameters

nodeId	The id of the node.
classIndex	The model class index.

Returns: the model with given index.

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

◆ parametrizablePhyloTree()

virtual const ParametrizablePhyloTree& bpp::SubstitutionProcessInterface::parametrizablePhyloTree ( ) const

pure virtual

Implemented in bpp::SubstitutionProcessCollectionMember, and bpp::AbstractAutonomousSubstitutionProcess.

Referenced by bpp::SubstitutionMappingTools::computeCounts(), bpp::SubstitutionMappingTools::computeNormalizations(), bpp::SubstitutionMappingTools::computeNormalizedCounts(), and bpp::RewardMappingTools::computeRewardVectors().

◆ rateDistribution() [1/2]

virtual const DiscreteDistributionInterface& bpp::SubstitutionProcessInterface::rateDistribution ( ) const

pure virtual

Get the rate distribution.

Exceptions

NullPointerException if there is no associated rate distribution.

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

Referenced by bpp::OneProcessSequencePhyloLikelihood::getPosteriorRatePerSite().

◆ rateDistribution() [2/2]

virtual DiscreteDistributionInterface& bpp::SubstitutionProcessInterface::rateDistribution ( )

pure virtual

Get the rate distribution.

Exceptions

NullPointerException if there is no associated rate distribution.

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

◆ rootFrequencySet() [1/2]

virtual const FrequencySetInterface& bpp::SubstitutionProcessInterface::rootFrequencySet ( ) const

pure virtual

Returns: The set of parametrized root frequencies.

Implemented in bpp::SubstitutionProcessCollectionMember, and bpp::AbstractAutonomousSubstitutionProcess.

◆ rootFrequencySet() [2/2]

virtual FrequencySetInterface& bpp::SubstitutionProcessInterface::rootFrequencySet ( )

pure virtual

Returns: The set of parametrized root frequencies.

Implemented in bpp::SubstitutionProcessCollectionMember, and bpp::AbstractAutonomousSubstitutionProcess.

◆ stateMap()

virtual const StateMapInterface& bpp::SubstitutionProcessInterface::stateMap ( ) const

pure virtual

Returns: The state map associated with the models of this process

Implemented in bpp::SubstitutionProcessCollectionMember, bpp::SimpleSubstitutionProcess, bpp::RateAcrossSitesSubstitutionProcess, and bpp::NonHomogeneousSubstitutionProcess.

Referenced by bpp::AbstractSubstitutionProcess::getAlphabet(), bpp::AbstractSubstitutionProcess::getNumberOfStates(), and bpp::SequenceEvolution::stateMap().

The documentation for this class was generated from the following file:

Bpp/Phyl/Likelihood/SubstitutionProcess.h

Public Member Functions

Protected Member Functions

Detailed Description

Member Function Documentation

◆ clone()

◆ getBranchLengthParameters()

◆ getClassProbabilities()

◆ getModel() [1/2]

◆ getModel() [2/2]

◆ getModelForNode()

◆ getModelNumberForNode()

◆ getModelNumbers()

◆ getModelScenario()

◆ getNodesWithModel()

◆ getNonDerivableParameters()

◆ getNumberOfClasses()

◆ getNumberOfModels()

◆ getNumberOfStates()

◆ getParametrizablePhyloTree()

◆ getProbabilityForModel()

◆ getRateDistribution() [1/2]

◆ getRateDistribution() [2/2]

◆ getRateDistributionParameters()

◆ getRateForModel()

◆ getRootFrequencies()

◆ getRootFrequenciesParameters()

◆ getRootFrequencySet() [1/2]

◆ getRootFrequencySet() [2/2]

◆ getStateMap()

◆ getSubstitutionModelParameters()

◆ hasRootFrequencySet()

◆ isCompatibleWith()

◆ model() [1/2]

◆ model() [2/2]

◆ parametrizablePhyloTree()

◆ rateDistribution() [1/2]

◆ rateDistribution() [2/2]

◆ rootFrequencySet() [1/2]

◆ rootFrequencySet() [2/2]

◆ stateMap()