BppOBranchModelFormat.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_PHYL_IO_BPPOBRANCHMODELFORMAT_H
#define BPP_PHYL_IO_BPPOBRANCHMODELFORMAT_H
 
 
#include "BppOTransitionModelFormat.h"
 
namespace bpp
{
class BppOBranchModelFormat :
  public BppOTransitionModelFormat
{
public:
  BppOBranchModelFormat(unsigned char alphabetCode, bool allowCovarions, bool allowMixed, bool allowGaps, bool verbose, int warn) :
    BppOTransitionModelFormat(alphabetCode, allowCovarions, allowMixed, allowGaps, verbose, warn)
  {}
 
  BppOBranchModelFormat(const BppOTransitionModelFormat& format) :
    BppOTransitionModelFormat(format)
  {}
 
  BppOBranchModelFormat& operator=(const BppOBranchModelFormat& format)
  {
    BppOTransitionModelFormat::operator=(format);
    return *this;
  }
 
public:
  std::unique_ptr<BranchModelInterface> readBranchModel(
      std::shared_ptr<const Alphabet> alphabet,
      const std::string& modelDescription,
      const std::map<size_t, std::shared_ptr<const AlignmentDataInterface>>& mData,
      size_t nData,
      bool parseArguments = true);
};
} // end of namespace bpp.
#endif // BPP_PHYL_IO_BPPOBRANCHMODELFORMAT_H