DistanceMethod.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_PHYL_DISTANCE_DISTANCEMETHOD_H
#define BPP_PHYL_DISTANCE_DISTANCEMETHOD_H
 
 
// From bpp-core:
#include <Bpp/Clonable.h>
#include <Bpp/Exceptions.h>
 
// From the STL:
#include <string>
 
namespace bpp
{
class DistanceMatrix;
class Node;
class Tree;
 
class DistanceMethodInterface :
  public virtual Clonable
{
public:
  DistanceMethodInterface() {}
  virtual ~DistanceMethodInterface() {}
 
  virtual DistanceMethodInterface* clone() const override = 0;
 
public:
  virtual void setDistanceMatrix(const DistanceMatrix& matrix) = 0;
 
  virtual void computeTree() = 0;
 
  virtual bool hasTree() const = 0;
 
  virtual const Tree& tree() const = 0;
 
  virtual std::string getName() const = 0;
 
  virtual void setVerbose(bool yn) = 0;
 
  virtual bool isVerbose() const = 0;
};
 
class AgglomerativeDistanceMethodInterface :
  public virtual DistanceMethodInterface
{
public:
  AgglomerativeDistanceMethodInterface() {}
  virtual ~AgglomerativeDistanceMethodInterface() {}
 
  virtual AgglomerativeDistanceMethodInterface* clone() const override = 0;
};
} // end of namespace bpp.
#endif // BPP_PHYL_DISTANCE_DISTANCEMETHOD_H