EvolutionSequenceSimulator.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_PHYL_SIMULATION_EVOLUTIONSEQUENCESIMULATOR_H
#define BPP_PHYL_SIMULATION_EVOLUTIONSEQUENCESIMULATOR_H
 
 
#include "../Likelihood/SequenceEvolution.h"
#include "SubstitutionProcessSequenceSimulator.h"
 
namespace bpp
{
class EvolutionSequenceSimulator :
  public SubstitutionProcessSequenceSimulator
{
private:
  const SequenceEvolution* seqEvol_;
 
public:
  EvolutionSequenceSimulator(const SequenceEvolution& evol);
 
  virtual ~EvolutionSequenceSimulator()
  {}
 
  EvolutionSequenceSimulator(const EvolutionSequenceSimulator& ess) :
    SubstitutionProcessSequenceSimulator(ess),
    seqEvol_(ess.seqEvol_)
  {}
 
  EvolutionSequenceSimulator& operator=(const EvolutionSequenceSimulator& ess)
  {
    SubstitutionProcessSequenceSimulator::operator=(ess);
    seqEvol_ = ess.seqEvol_;
 
    return *this;
  }
 
  EvolutionSequenceSimulator* clone() const { return new EvolutionSequenceSimulator(*this); }
 
public:
  void resetSiteSimulators(size_t numberOfSites) const;
};
} // end of namespace bpp.
#endif // BPP_PHYL_SIMULATION_EVOLUTIONSEQUENCESIMULATOR_H