HomogeneousTreeLikelihood.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_PHYL_LEGACY_LIKELIHOOD_HOMOGENEOUSTREELIKELIHOOD_H
#define BPP_PHYL_LEGACY_LIKELIHOOD_HOMOGENEOUSTREELIKELIHOOD_H
 
 
#include "../../Model/SubstitutionModel.h"
#include "TreeLikelihood.h"
 
namespace bpp
{
class HomogeneousTreeLikelihood :
  public virtual TreeLikelihoodInterface
{
public:
  HomogeneousTreeLikelihood* clone() const = 0;
 
public:
  std::shared_ptr<const TransitionModelInterface> getModelForSite(int nodeId, size_t siteIndex) const
  {
    return getModel();
  }
 
  std::shared_ptr<TransitionModelInterface> getModelForSite(int nodeId, size_t siteIndex)
  {
    return getModel();
  }
 
  virtual std::shared_ptr<const TransitionModelInterface> getModel() const = 0;
 
  virtual std::shared_ptr<TransitionModelInterface> getModel() = 0;
 
  virtual void setModel(std::shared_ptr<TransitionModelInterface> model) = 0;
 
  virtual std::shared_ptr<const SubstitutionModelInterface> getSubstitutionModel() const = 0;
 
  virtual std::shared_ptr<const SubstitutionModelInterface> getSubstitutionModel(int nodeId, size_t siteIndex) const = 0;
};
} // end of namespace bpp.
#endif // BPP_PHYL_LEGACY_LIKELIHOOD_HOMOGENEOUSTREELIKELIHOOD_H