AncestralStateReconstruction.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef _LEGACY_ANCESTRAL_STATES_RECONSTRUCTION_H_
#define _LEGACY_ANCESTRAL_STATES_RECONSTRUCTION_H_
 
// From SeqLib:
#include <Bpp/Seq/Sequence.h>
#include <Bpp/Seq/Container/SiteContainer.h>
 
// From the STL:
#include <vector>
#include <map>
 
namespace bpp
{
class Node;
 
class LegacyAncestralStateReconstruction
{
public:
  LegacyAncestralStateReconstruction() {}
  virtual ~LegacyAncestralStateReconstruction() {}
 
public:
  virtual std::vector<size_t> getAncestralStatesForNode(int nodeId) const = 0;
 
  virtual std::map<int, std::vector<size_t>> getAllAncestralStates() const = 0;
 
  virtual std::unique_ptr<Sequence> getAncestralSequenceForNode(int nodeId) const = 0;
 
  virtual std::unique_ptr<SiteContainerInterface> getAncestralSequences() const = 0;
};
} // end of namespace bpp.
 
#endif // _LEGACY_ANCESTRAL_STATES_RECONSTRUCTION_H_