FrequencySet.h File Reference
#include "../StateMap.h"#include <Bpp/Numeric/ParameterAliasable.h>#include <Bpp/Numeric/AbstractParameterAliasable.h>#include <Bpp/Numeric/VectorTools.h>#include <Bpp/Numeric/Prob/Simplex.h>#include <Bpp/Seq/Alphabet/Alphabet.h>
Include dependency graph for FrequencySet.h:
This graph shows which files directly or indirectly include this file:
Go to the source code of this file.
Classes | |
| class | bpp::FrequencySetInterface |
| Parametrize a set of state frequencies. More... | |
| class | bpp::AbstractFrequencySet |
| Basic implementation of the FrequencySet interface. More... | |
| class | bpp::FullFrequencySet |
| A generic FrequencySet allowing for the estimation of all frequencies. More... | |
| class | bpp::FromModelFrequencySet |
| FrequencySet defined from the equilibrium distribution of a given model. More... | |
| class | bpp::MarkovModulatedFrequencySet |
| FrequencySet to be used with a Markov-modulated substitution model. More... | |
| class | bpp::FixedFrequencySet |
| FrequencySet useful for homogeneous and stationary models. More... | |
| class | bpp::UserFrequencySet |
| FrequencySet to be read in a file. More specifically, a frequency set is read in a column of a given file, which column number is given in argument (default: 1). More... | |
Namespaces | |
| bpp | |
| Defines the basic types of data flow nodes. | |
