#include "../StateMap.h"
#include <Bpp/Numeric/ParameterAliasable.h>
#include <Bpp/Numeric/AbstractParameterAliasable.h>
#include <Bpp/Numeric/VectorTools.h>
#include <Bpp/Numeric/Prob/Simplex.h>
#include <Bpp/Seq/Alphabet/Alphabet.h>

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Classes
class	bpp::FrequencySetInterface
	Parametrize a set of state frequencies. More...

class	bpp::AbstractFrequencySet
	Basic implementation of the FrequencySet interface. More...

class	bpp::FullFrequencySet
	A generic FrequencySet allowing for the estimation of all frequencies. More...

class	bpp::FromModelFrequencySet
	FrequencySet defined from the equilibrium distribution of a given model. More...

class	bpp::MarkovModulatedFrequencySet
	FrequencySet to be used with a Markov-modulated substitution model. More...

class	bpp::FixedFrequencySet
	FrequencySet useful for homogeneous and stationary models. More...

class	bpp::UserFrequencySet
	FrequencySet to be read in a file. More specifically, a frequency set is read in a column of a given file, which column number is given in argument (default: 1). More...

Namespaces
namespace	bpp
	Defines the basic types of data flow nodes.

Classes

Namespaces