SequenceSimulationTools.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_PHYL_SIMULATION_SEQUENCESIMULATIONTOOLS_H
#define BPP_PHYL_SIMULATION_SEQUENCESIMULATIONTOOLS_H
 
 
#include "SequenceSimulator.h"
 
// From Seqlib:
#include <Bpp/Seq/Container/SiteContainer.h>
 
// From the STL:
#include <vector>
 
namespace bpp
{
class SequenceSimulationTools
{
public:
  SequenceSimulationTools() {}
  ~SequenceSimulationTools() {}
 
public:
  static std::unique_ptr<SiteContainerInterface> simulateSites(
      const SequenceSimulatorInterface& simulator,
      const std::vector<double>& rates);
 
  static std::unique_ptr<SiteContainerInterface> simulateSites(
      const SequenceSimulatorInterface& simulator,
      const std::vector<double>& rates,
      const std::vector<size_t>& states);
 
  static std::unique_ptr<SiteContainerInterface> simulateSites(
      const SequenceSimulatorInterface& simulator,
      const std::vector<size_t>& states);
};
} // end of namespace bpp.
#endif // BPP_PHYL_SIMULATION_SEQUENCESIMULATIONTOOLS_H