SubstitutionModelSetTools.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_PHYL_LEGACY_MODEL_SUBSTITUTIONMODELSETTOOLS_H
#define BPP_PHYL_LEGACY_MODEL_SUBSTITUTIONMODELSETTOOLS_H
 
 
#include "../../Tree/Tree.h"
#include "SubstitutionModelSet.h"
 
// From the STL:
#include <vector>
#include <map>
 
namespace bpp
{
class SubstitutionModelSetTools
{
public:
  static std::unique_ptr<SubstitutionModelSet> createHomogeneousModelSet(
      std::shared_ptr<TransitionModelInterface> model,
      std::shared_ptr<FrequencySetInterface> rootFreqs,
      const Tree& tree
      );
 
  static std::unique_ptr<SubstitutionModelSet> createNonHomogeneousModelSet(
      std::shared_ptr<TransitionModelInterface> model,
      std::shared_ptr<FrequencySetInterface> rootFreqs,
      const Tree& tree,
      const std::map<std::string, std::string>& aliasFreqNames,
      const std::map<std::string, std::vector<Vint>>& globalParameterNames
      );
};
} // end of namespace bpp.
#endif // BPP_PHYL_LEGACY_MODEL_SUBSTITUTIONMODELSETTOOLS_H