TreeLikelihoodTools.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_PHYL_LEGACY_LIKELIHOOD_TREELIKELIHOODTOOLS_H
#define BPP_PHYL_LEGACY_LIKELIHOOD_TREELIKELIHOODTOOLS_H
 
 
#include "TreeLikelihood.h"
 
// From the STL:
#include <vector>
#include <map>
 
namespace bpp
{
class TreeLikelihoodTools
{
public:
  TreeLikelihoodTools() {}
  virtual ~TreeLikelihoodTools() {}
 
public:
  static void getAncestralFrequencies(
      const TreeLikelihoodInterface& tl,
      size_t site,
      std::map<int, std::vector<double>>& frequencies,
      bool alsoForLeaves = false);
 
  static void getAncestralFrequencies(
      const TreeLikelihoodInterface& tl,
      std::map<int, std::vector<double>>& frequencies,
      bool alsoForLeaves = false);
 
private:
  static void getAncestralFrequencies_(
      const TreeLikelihoodInterface& tl,
      size_t siteIndex,
      int parentId,
      const std::vector<double>& ancestralFrequencies,
      std::map<int, std::vector<double>>& frequencies,
      bool alsoForLeaves);
};
} // end of namespace bpp.
#endif // BPP_PHYL_LEGACY_LIKELIHOOD_TREELIKELIHOODTOOLS_H