TreeParsimonyScore.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_PHYL_PARSIMONY_TREEPARSIMONYSCORE_H
#define BPP_PHYL_PARSIMONY_TREEPARSIMONYSCORE_H
 
#include <Bpp/Clonable.h>
 
#include "../Tree/TreeTemplate.h"
 
// From the STL:
#include <vector>
 
namespace bpp
{
class TreeParsimonyScoreInterface :
  public virtual Clonable
{
public:
  TreeParsimonyScoreInterface() {}
  virtual ~TreeParsimonyScoreInterface() {}
 
  TreeParsimonyScoreInterface* clone() const = 0;
 
public:
  virtual unsigned int getScore() const = 0;
 
  virtual unsigned int getScoreForSite(size_t site) const = 0;
 
  virtual std::vector<unsigned int> getScorePerSite() const = 0;
 
  virtual const Tree& tree() const = 0;
 
  virtual const StateMapInterface& stateMap() const = 0;
 
  virtual std::shared_ptr<const StateMapInterface> getStateMap() const = 0;
};
} // end of namespace bpp.
#endif // BPP_PHYL_PARSIMONY_TREEPARSIMONYSCORE_H