DataFlowCWiseComputing.h File Reference

#include <Bpp/Numeric/Parameter.h>
#include <Bpp/Phyl/Likelihood/DataFlow/ExtendedFloat.h>
#include <Bpp/Phyl/Likelihood/DataFlow/Parameter.h>
#include <Eigen/Core>
#include <algorithm>
#include <cassert>
#include <iostream>
#include <list>
#include <string>
#include <tuple>
#include <type_traits>
#include "DataFlowCWise.h"
#include "DataFlowNumeric.h"
#include "Definitions.h"

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Classes
class	bpp::CWiseApply< R, T, F >
class	bpp::CWiseAdd< R, std::tuple< T0, T1 > >
class	bpp::CWiseSub< R, std::tuple< T0, T1 > >
class	bpp::CWiseAdd< R, ReductionOf< T > >
class	bpp::CWiseAdd< R, T >
class	bpp::CWiseMean< R, ReductionOf< T >, ReductionOf< P > >
class	bpp::CWiseMean< R, ReductionOf< T >, P >
class	bpp::CWiseMul< R, std::tuple< T0, T1 > >
class	bpp::CWiseMul< R, ReductionOf< T > >
class	bpp::CWiseDiv< R, std::tuple< T0, T1 > >
class	bpp::CWiseNegate< T >
class	bpp::CWiseInverse< T >
class	bpp::CWiseLog< T >
class	bpp::CWiseExp< T >
class	bpp::CWiseConstantPow< T >
class	bpp::ScalarProduct< R, T0, T1 >
class	bpp::SumOfLogarithms< F >
class	bpp::LogSumExp< R, T0, T1 >
class	bpp::MatrixProduct< R, T0, T1 >
class	bpp::ShiftDelta< T >
class	bpp::CombineDeltaShifted< T >
struct	bpp::NumericalDerivativeConfiguration
	Configuration for a numerical derivation: what delta to use, and type of derivation. More...

Namespaces
	bpp
	Defines the basic types of data flow nodes.

Enumerations
enum class	bpp::NumericalDerivativeType { bpp::Disabled , bpp::ThreePoints , bpp::FivePoints }

Functions
template<typename NodeT , typename DepT , typename B >
ValueRef< NodeT >	bpp::generateNumericalDerivative (Context &c, const NumericalDerivativeConfiguration &config, NodeRef dep, const Dimension< DepT > &depDim, Dimension< NodeT > &nodeDim, B buildNodeWithDep)
	Helper used to generate data flow expressions computing a numerical derivative. More...
template<typename NodeT , typename B >
ValueRef< NodeT >	bpp::generateNumericalDerivative (Context &c, const NumericalDerivativeConfiguration &config, NodeRef dep, const Dimension< NodeT > &nodeDim, B buildNodeWithDep)