LikelihoodCalculationOnABranch.h File Reference

#include <Bpp/Graph/AssociationDAGraphImplObserver.h>
#include <Bpp/Seq/Container/AlignmentData.h>
#include "Bpp/Phyl/Likelihood/DataFlow/LikelihoodCalculationSingleProcess.h"
#include "Bpp/Phyl/Likelihood/DataFlow/Model.h"
#include "Bpp/Phyl/Likelihood/SubstitutionProcess.h"

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Classes
class	bpp::LikelihoodCalculationOnABranch
class	bpp::LikelihoodCalculationOnABranch::RateCategoryEdge

Namespaces
	bpp
	Defines the basic types of data flow nodes.

Typedefs
using	bpp::LikelihoodFromRootConditionalAtRoot = MatrixProduct< RowLik, Eigen::RowVectorXd, MatrixLik >
using	bpp::TotalLogLikelihood = SumOfLogarithms< RowLik >
	totalLikelihood = product_site likelihood(site). More...
using	bpp::BuildConditionalLikelihood = CWiseMul< MatrixLik, std::tuple< MatrixLik, MatrixLik > >
	Conditionallikelihood = AboveConditionalLikelihood * BelowConditionalLikelihood. More...
using	bpp::AllRatesSiteLikelihoods = MatrixLik
using	bpp::SiteWeights = NumericConstant< Eigen::RowVectorXi >