bpp-phyl3  3.0.0
YNGP_M1.h
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1 // SPDX-FileCopyrightText: The Bio++ Development Group
2 //
3 // SPDX-License-Identifier: CECILL-2.1
4 
5 #ifndef BPP_PHYL_MODEL_CODON_YNGP_M1_H
6 #define BPP_PHYL_MODEL_CODON_YNGP_M1_H
7 
8 
9 #include "YNGP_M.h"
10 
11 namespace bpp
12 {
40 class YNGP_M1 :
41  public YNGP_M
42 {
43 public:
44  YNGP_M1(
45  std::shared_ptr<const GeneticCode> gc,
46  std::unique_ptr<CodonFrequencySetInterface> codonFreqs);
47 
48  YNGP_M1* clone() const override { return new YNGP_M1(*this); }
49 
50 public:
51  std::string getName() const override { return "YNGP_M1"; }
52 
53 protected:
54  void updateMatrices_() override;
55 };
56 } // end of namespace bpp.
57 #endif // BPP_PHYL_MODEL_CODON_YNGP_M1_H
The Yang et al (2000) M1 substitution model for codons, with the more realistic modification in Wong ...
Definition: YNGP_M1.h:42
YNGP_M1(std::shared_ptr< const GeneticCode > gc, std::unique_ptr< CodonFrequencySetInterface > codonFreqs)
Definition: YNGP_M1.cpp:17
std::string getName() const override
Get the name of the model.
Definition: YNGP_M1.h:51
YNGP_M1 * clone() const override
Definition: YNGP_M1.h:48
void updateMatrices_() override
Definition: YNGP_M1.cpp:97
Abstract generic class for The Yang et al (2000) M substitution models for codons....
Definition: YNGP_M.h:32
Defines the basic types of data flow nodes.