Codon Directory Reference

Directory dependency graph for Codon:

Files
file	AbstractCodonAAFitnessSubstitutionModel.cpp [code]
file	AbstractCodonAAFitnessSubstitutionModel.h [code]
file	AbstractCodonAARateSubstitutionModel.cpp [code]
file	AbstractCodonAARateSubstitutionModel.h [code]
file	AbstractCodonBGCSubstitutionModel.cpp [code]
file	AbstractCodonBGCSubstitutionModel.h [code]
file	AbstractCodonClusterAASubstitutionModel.cpp [code]
file	AbstractCodonClusterAASubstitutionModel.h [code]
file	AbstractCodonCpGSubstitutionModel.cpp [code]
file	AbstractCodonCpGSubstitutionModel.h [code]
file	AbstractCodonDistanceSubstitutionModel.cpp [code]
file	AbstractCodonDistanceSubstitutionModel.h [code]
file	AbstractCodonFitnessSubstitutionModel.cpp [code]
file	AbstractCodonFitnessSubstitutionModel.h [code]
file	AbstractCodonFrequenciesSubstitutionModel.cpp [code]
file	AbstractCodonFrequenciesSubstitutionModel.h [code]
file	AbstractCodonPhaseFrequenciesSubstitutionModel.cpp [code]
file	AbstractCodonPhaseFrequenciesSubstitutionModel.h [code]
file	AbstractCodonSubstitutionModel.cpp [code]
file	AbstractCodonSubstitutionModel.h [code]
file	AbstractDFPSubstitutionModel.cpp [code]
file	AbstractDFPSubstitutionModel.h [code]
file	AbstractKroneckerCodonSubstitutionModel.cpp [code]
file	AbstractKroneckerCodonSubstitutionModel.h [code]
file	CodonAdHocSubstitutionModel.cpp [code]
file	CodonAdHocSubstitutionModel.h [code]
file	CodonDistanceFrequenciesSubstitutionModel.cpp [code]
file	CodonDistanceFrequenciesSubstitutionModel.h [code]
file	CodonDistancePhaseFrequenciesSubstitutionModel.cpp [code]
file	CodonDistancePhaseFrequenciesSubstitutionModel.h [code]
file	CodonDistanceSubstitutionModel.cpp [code]
file	CodonDistanceSubstitutionModel.h [code]
file	CodonSameAARateSubstitutionModel.cpp [code]
file	CodonSameAARateSubstitutionModel.h [code]
file	CodonSubstitutionModel.h [code]
file	DFP07.cpp [code]
file	DFP07.h [code]
file	DFPDistanceFrequenciesSubstitutionModel.cpp [code]
file	DFPDistanceFrequenciesSubstitutionModel.h [code]
file	GY94.cpp [code]
file	GY94.h [code]
file	KCM.cpp [code]
file	KCM.h [code]
file	KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp [code]
file	KroneckerCodonDistanceFrequenciesSubstitutionModel.h [code]
file	KroneckerCodonDistanceSubstitutionModel.cpp [code]
file	KroneckerCodonDistanceSubstitutionModel.h [code]
file	MG94.cpp [code]
file	MG94.h [code]
file	RELAX.cpp [code]
file	RELAX.h [code]
file	SENCA.cpp [code]
file	SENCA.h [code]
file	TripletSubstitutionModel.cpp [code]
file	TripletSubstitutionModel.h [code]
file	YN98.cpp [code]
file	YN98.h [code]
file	YNGP_M.h [code]
file	YNGP_M1.cpp [code]
file	YNGP_M1.h [code]
file	YNGP_M10.cpp [code]
file	YNGP_M10.h [code]
file	YNGP_M2.cpp [code]
file	YNGP_M2.h [code]
file	YNGP_M3.cpp [code]
file	YNGP_M3.h [code]
file	YNGP_M7.cpp [code]
file	YNGP_M7.h [code]
file	YNGP_M8.cpp [code]
file	YNGP_M8.h [code]
file	YNGP_M9.cpp [code]
file	YNGP_M9.h [code]