#include <Bpp/Phyl/Io/IoTree.h>

Inheritance diagram for bpp::AbstractIPhyloTree:

Collaboration diagram for bpp::AbstractIPhyloTree:

Public Member Functions
	AbstractIPhyloTree ()

virtual	~AbstractIPhyloTree ()

std::unique_ptr< PhyloTree >	readPhyloTree (std::istream &in) const override=0
	Read a tree from a stream. More...

std::unique_ptr< PhyloTree >	readPhyloTree (const std::string &path) const override
	Read a tree from a file. More...

Element	getElement (const std::string &elt) const

virtual const std::string	getDataType () const

virtual const std::string	getFormatName () const=0

virtual const std::string	getFormatDescription () const=0

Detailed Description

Definition at line 225 of file IoTree.h.

Constructor & Destructor Documentation

◆ AbstractIPhyloTree()

bpp::AbstractIPhyloTree::AbstractIPhyloTree ( )

inline

Definition at line 229 of file IoTree.h.

◆ ~AbstractIPhyloTree()

virtual bpp::AbstractIPhyloTree::~AbstractIPhyloTree ( )

inlinevirtual

Definition at line 230 of file IoTree.h.

Member Function Documentation

◆ getDataType()

virtual const std::string bpp::IOTree::getDataType ( ) const

inlinevirtualinherited

Implements bpp::IOFormat.

Definition at line 51 of file IoTree.h.

◆ getElement()

Element bpp::AbstractIPhyloTree::getElement ( const std::string & elt ) const

inline

Definition at line 245 of file IoTree.h.

◆ readPhyloTree() [1/2]

std::unique_ptr<PhyloTree> bpp::AbstractIPhyloTree::readPhyloTree ( const std::string & path ) const

inlineoverridevirtual

Read a tree from a file.

Parameters

path	The file path.

Returns: A new tree object.

Exceptions

Exception If an error occurred.

Implements bpp::IPhyloTree.

Definition at line 235 of file IoTree.h.

References readPhyloTree().

◆ readPhyloTree() [2/2]

std::unique_ptr<PhyloTree> bpp::AbstractIPhyloTree::readPhyloTree ( std::istream & in ) const

overridepure virtual

Read a tree from a stream.