- Generated on Fri Jul 19 2024 11:49:23 for bpp-phyl3 by
1.9.1
|
bpp-phyl3
3.0.0
|
This is the complete list of members for bpp::NexusIOTree, including all inherited members.
| AbstractIMultiPhyloTree() | bpp::AbstractIMultiPhyloTree | inline |
| AbstractIMultiTree() | bpp::AbstractIMultiTree | inline |
| AbstractIPhyloTree() | bpp::AbstractIPhyloTree | inline |
| AbstractITree() | bpp::AbstractITree | inline |
| AbstractOMultiPhyloTree() | bpp::AbstractOMultiPhyloTree | inline |
| AbstractOMultiTree() | bpp::AbstractOMultiTree | inline |
| AbstractOPhyloTree() | bpp::AbstractOPhyloTree | inline |
| AbstractOTree() | bpp::AbstractOTree | inline |
| getDataType() const | bpp::IOTree | inlinevirtual |
| bpp::getElement(const std::string &elt) const | bpp::AbstractITree | inlinevirtual |
| bpp::AbstractIPhyloTree::getElement(const std::string &elt) const | bpp::AbstractIPhyloTree | inline |
| getFormatDescription() const override | bpp::NexusIOTree | virtual |
| getFormatName() const override | bpp::NexusIOTree | virtual |
| IMultiPhyloTree() | bpp::IMultiPhyloTree | inline |
| IMultiTree() | bpp::IMultiTree | inline |
| IOFormat() | bpp::IOFormat | |
| IOTree() | bpp::IOTree | inline |
| IPhyloTree() | bpp::IPhyloTree | inline |
| ITree() | bpp::ITree | inline |
| NexusIOTree() | bpp::NexusIOTree | inline |
| OMultiPhyloTree() | bpp::OMultiPhyloTree | inline |
| OMultiTree() | bpp::OMultiTree | inline |
| OPhyloTree() | bpp::OPhyloTree | inline |
| OTree() | bpp::OTree | inline |
| readPhyloTree(std::istream &in) const override | bpp::NexusIOTree | virtual |
| readPhyloTree(std::istream &in) const override=0 | bpp::NexusIOTree | |
| readPhyloTree(const std::string &path) const override | bpp::NexusIOTree | inline |
| bpp::AbstractIPhyloTree::readPhyloTree(const std::string &path) const override | bpp::AbstractIPhyloTree | inlinevirtual |
| readPhyloTrees(std::istream &in, std::vector< std::unique_ptr< PhyloTree >> &trees) const override | bpp::NexusIOTree | virtual |
| readPhyloTrees(std::istream &in, std::vector< std::unique_ptr< PhyloTree >> &trees) const override=0 | bpp::NexusIOTree | |
| readPhyloTrees(const std::string &path, std::vector< std::unique_ptr< PhyloTree >> &trees) const override | bpp::NexusIOTree | inline |
| bpp::AbstractIMultiPhyloTree::readPhyloTrees(const std::string &path, std::vector< std::unique_ptr< PhyloTree >> &trees) const override | bpp::AbstractIMultiPhyloTree | inlinevirtual |
| readTree(std::istream &in) const override | bpp::AbstractITree | inlinevirtual |
| readTree(const std::string &path) const override | bpp::AbstractITree | inlinevirtual |
| readTrees(std::istream &in, std::vector< std::unique_ptr< Tree >> &trees) const override | bpp::NexusIOTree | virtual |
| readTrees(std::istream &in, std::vector< std::unique_ptr< Tree >> &trees) const override=0 | bpp::NexusIOTree | |
| readTrees(const std::string &path, std::vector< std::unique_ptr< Tree >> &trees) const override | bpp::NexusIOTree | inline |
| bpp::AbstractIMultiTree::readTrees(const std::string &path, std::vector< std::unique_ptr< Tree >> &trees) const override | bpp::AbstractIMultiTree | inlinevirtual |
| readTreeTemplate(std::istream &in) const override | bpp::NexusIOTree | virtual |
| readTreeTemplate(std::istream &in) const=0 | bpp::NexusIOTree | |
| readTreeTemplate(const std::string &path) const | bpp::NexusIOTree | inline |
| bpp::AbstractITree::readTreeTemplate(const std::string &path) const | bpp::AbstractITree | inlinevirtual |
| write_(const Tree &tree, std::ostream &out) const | bpp::NexusIOTree | protected |
| write_(const PhyloTree &tree, std::ostream &out) const | bpp::NexusIOTree | protected |
| write_(const TreeTemplate< N > &tree, std::ostream &out) const | bpp::NexusIOTree | protected |
| write_(const std::vector< const Tree * > &trees, std::ostream &out) const | bpp::NexusIOTree | protected |
| write_(const std::vector< const PhyloTree * > &trees, std::ostream &out) const | bpp::NexusIOTree | protected |
| write_(const std::vector< TreeTemplate< N > * > &trees, std::ostream &out) const | bpp::NexusIOTree | protected |
| writePhyloTree(const PhyloTree &tree, std::ostream &out) const override | bpp::NexusIOTree | inlinevirtual |
| writePhyloTree(const PhyloTree &tree, std::ostream &out) const=0 | bpp::NexusIOTree | |
| writePhyloTree(const PhyloTree &tree, const std::string &path, bool overwrite) const | bpp::NexusIOTree | inline |
| bpp::AbstractOPhyloTree::writePhyloTree(const PhyloTree &tree, const std::string &path, bool overwrite) const | bpp::AbstractOPhyloTree | inlinevirtual |
| writePhyloTrees(const std::vector< const PhyloTree * > &trees, std::ostream &out) const override | bpp::NexusIOTree | inlinevirtual |
| writePhyloTrees(const std::vector< const PhyloTree * > &trees, std::ostream &out) const=0 | bpp::NexusIOTree | |
| writePhyloTrees(const std::vector< const PhyloTree * > &trees, const std::string &path, bool overwrite) const | bpp::NexusIOTree | inline |
| bpp::AbstractOMultiPhyloTree::writePhyloTrees(const std::vector< const PhyloTree * > &trees, const std::string &path, bool overwrite) const | bpp::AbstractOMultiPhyloTree | inlinevirtual |
| writeTree(const Tree &tree, std::ostream &out) const override | bpp::NexusIOTree | inlinevirtual |
| writeTree(const Tree &tree, std::ostream &out) const=0 | bpp::NexusIOTree | |
| writeTree(const Tree &tree, const std::string &path, bool overwrite) const | bpp::NexusIOTree | inline |
| bpp::AbstractOTree::writeTree(const Tree &tree, const std::string &path, bool overwrite) const | bpp::AbstractOTree | inlinevirtual |
| writeTrees(const std::vector< const Tree * > &trees, std::ostream &out) const override | bpp::NexusIOTree | inlinevirtual |
| writeTrees(const std::vector< const Tree * > &trees, std::ostream &out) const=0 | bpp::NexusIOTree | |
| writeTrees(const std::vector< const Tree * > &trees, const std::string &path, bool overwrite) const | bpp::NexusIOTree | inline |
| bpp::AbstractOMultiTree::writeTrees(const std::vector< const Tree * > &trees, const std::string &path, bool overwrite) const | bpp::AbstractOMultiTree | inlinevirtual |
| ~AbstractIMultiPhyloTree() | bpp::AbstractIMultiPhyloTree | inlinevirtual |
| ~AbstractIMultiTree() | bpp::AbstractIMultiTree | inlinevirtual |
| ~AbstractIPhyloTree() | bpp::AbstractIPhyloTree | inlinevirtual |
| ~AbstractITree() | bpp::AbstractITree | inlinevirtual |
| ~AbstractOMultiPhyloTree() | bpp::AbstractOMultiPhyloTree | inlinevirtual |
| ~AbstractOMultiTree() | bpp::AbstractOMultiTree | inlinevirtual |
| ~AbstractOPhyloTree() | bpp::AbstractOPhyloTree | inlinevirtual |
| ~AbstractOTree() | bpp::AbstractOTree | inlinevirtual |
| ~IMultiPhyloTree() | bpp::IMultiPhyloTree | inlinevirtual |
| ~IMultiTree() | bpp::IMultiTree | inlinevirtual |
| ~IOFormat() | bpp::IOFormat | virtual |
| ~IOTree() | bpp::IOTree | inlinevirtual |
| ~IPhyloTree() | bpp::IPhyloTree | inlinevirtual |
| ~ITree() | bpp::ITree | inlinevirtual |
| ~NexusIOTree() | bpp::NexusIOTree | inlinevirtual |
| ~OMultiPhyloTree() | bpp::OMultiPhyloTree | inlinevirtual |
| ~OMultiTree() | bpp::OMultiTree | inlinevirtual |
| ~OPhyloTree() | bpp::OPhyloTree | inlinevirtual |
| ~OTree() | bpp::OTree | inlinevirtual |
1.9.1