bpp::SitePartition Class Reference

This is the interface for classes describing a site partition, each partition being intended to have its own substitution model. More...

#include <Bpp/Phyl/Likelihood/SitePartition.h>

Inheritance diagram for bpp::SitePartition:

Collaboration diagram for bpp::SitePartition:

Public Member Functions
SitePartition *	clone () const =0
virtual size_t	getNumberOfPartitions () const =0
virtual size_t	getNumberOfPatternsForPartition (size_t partitionIndex) const =0

Detailed Description

This is the interface for classes describing a site partition, each partition being intended to have its own substitution model.

A site partition defines the distinct patterns to be found in the data, A pattern being a unique combination of site * model.

Warning

This interface is still under construction. Breaks are expected to occur!

Definition at line 20 of file SitePartition.h.

Member Function Documentation

clone()

SitePartition* bpp::SitePartition::clone ( ) const

pure virtual

Implements bpp::Clonable.

Implemented in bpp::TrivialSitePartition.

getNumberOfPartitions()

virtual size_t bpp::SitePartition::getNumberOfPartitions ( ) const

pure virtual

Implemented in bpp::TrivialSitePartition.

getNumberOfPatternsForPartition()

virtual size_t bpp::SitePartition::getNumberOfPatternsForPartition ( size_t  partitionIndex ) const

pure virtual

Implemented in bpp::TrivialSitePartition.

---

The documentation for this class was generated from the following file:

• Bpp/Phyl/Likelihood/SitePartition.h