DataFlowCWiseComputing.cpp

Go to the documentation of this file.

// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#include <Bpp/Exceptions.h>
 
#include "DataFlowCWiseComputing.h"
 
namespace bpp
{
void failureDeltaNotDerivable (const std::type_info& contextNodeType)
{
  throw Exception (prettyTypeName (contextNodeType) +
        ": does not support derivation for the delta dependency");
}
void failureNumericalDerivationNotConfigured ()
{
  throw Exception ("Numerical derivation of expression is not configured: define the node "
        "providing the delta value, and choose a computation type.");
}
 
// Precompiled instantiations of numeric nodes
 
template class CWiseApply<MatrixLik, MatrixLik, TransitionFunction>;
 
template class CWiseAdd<double, std::tuple<double, double>>;
template class CWiseAdd<ExtendedFloat, std::tuple<ExtendedFloat, ExtendedFloat>>;
template class CWiseAdd<VectorLik, std::tuple<VectorLik, VectorLik>>;
template class CWiseAdd<RowLik, std::tuple<RowLik, RowLik>>;
template class CWiseAdd<MatrixLik, std::tuple<MatrixLik, MatrixLik>>;
template class CWiseAdd<TransitionFunction, std::tuple<TransitionFunction, TransitionFunction>>;
 
template class CWiseAdd<RowLik, MatrixLik>;
template class CWiseAdd<VectorLik, MatrixLik>;
template class CWiseAdd<DataLik, VectorLik>;
template class CWiseAdd<DataLik, RowLik>;
 
template class CWiseAdd<double, ReductionOf<double>>;
template class CWiseAdd<ExtendedFloat, ReductionOf<ExtendedFloat>>;
template class CWiseAdd<VectorLik, ReductionOf<VectorLik>>;
template class CWiseAdd<RowLik, ReductionOf<RowLik>>;
template class CWiseAdd<MatrixLik, ReductionOf<MatrixLik>>;
template class CWiseAdd<TransitionFunction, ReductionOf<TransitionFunction>>;
 
template class CWiseMean<VectorLik, ReductionOf<VectorLik>, ReductionOf<double>>;
template class CWiseMean<RowLik, ReductionOf<RowLik>, ReductionOf<double>>;
template class CWiseMean<MatrixLik, ReductionOf<MatrixLik>, ReductionOf<double>>;
template class CWiseMean<double, ReductionOf<double>, ReductionOf<double>>;
template class CWiseMean<ExtendedFloat, ReductionOf<ExtendedFloat>, ReductionOf<double>>;
 
template class CWiseMean<VectorLik, ReductionOf<VectorLik>, Eigen::VectorXd>;
template class CWiseMean<RowLik, ReductionOf<RowLik>,  Eigen::VectorXd>;
template class CWiseMean<MatrixLik, ReductionOf<MatrixLik>, Eigen::VectorXd>;
template class CWiseMean<VectorLik, ReductionOf<VectorLik>, Eigen::RowVectorXd>;
template class CWiseMean<RowLik, ReductionOf<RowLik>, Eigen::RowVectorXd>;
template class CWiseMean<MatrixLik, ReductionOf<MatrixLik>, Eigen::RowVectorXd>;
 
template class CWiseSub<double, std::tuple<double, double>>;
template class CWiseSub<ExtendedFloat, std::tuple<ExtendedFloat, ExtendedFloat>>;
template class CWiseSub<VectorLik, std::tuple<VectorLik, VectorLik>>;
template class CWiseSub<RowLik, std::tuple<RowLik, RowLik>>;
template class CWiseSub<MatrixLik, std::tuple<MatrixLik, MatrixLik>>;
 
template class CWiseSub<VectorLik, std::tuple<VectorLik, DataLik>>;
template class CWiseSub<RowLik, std::tuple<RowLik, DataLik>>;
 
template class CWiseMul<double, std::tuple<double, double>>;
template class CWiseMul<double, std::tuple<double, uint>>;
template class CWiseMul<ExtendedFloat, std::tuple<ExtendedFloat, ExtendedFloat>>;
template class CWiseMul<ExtendedFloat, std::tuple<ExtendedFloat, uint>>;
template class CWiseMul<VectorLik, std::tuple<VectorLik, VectorLik>>;
template class CWiseMul<RowLik, std::tuple<RowLik, RowLik>>;
template class CWiseMul<MatrixLik, std::tuple<MatrixLik, MatrixLik>>;
 
template class CWiseMul<RowLik, std::tuple<RowLik, Eigen::RowVectorXi>>;
template class CWiseMul<VectorLik, std::tuple<VectorLik, Eigen::RowVectorXi>>;
template class CWiseMul<VectorLik, std::tuple<DataLik, VectorLik>>;
template class CWiseMul<RowLik, std::tuple<DataLik, RowLik>>;
template class CWiseMul<MatrixLik, std::tuple<DataLik, MatrixLik>>;
template class CWiseMul<TransitionFunction, std::tuple<TransitionFunction, TransitionFunction>>;
template class CWiseMul<TransitionFunction, std::tuple<double, TransitionFunction>>;
 
template class CWiseMul<double, ReductionOf<double>>;
template class CWiseMul<ExtendedFloat, ReductionOf<ExtendedFloat>>;
template class CWiseMul<VectorLik, ReductionOf<VectorLik>>;
template class CWiseMul<RowLik, ReductionOf<RowLik>>;
template class CWiseMul<MatrixLik, ReductionOf<MatrixLik>>;
 
template class CWiseNegate<double>;
template class CWiseNegate<ExtendedFloat>;
template class CWiseNegate<VectorLik>;
template class CWiseNegate<RowLik>;
template class CWiseNegate<MatrixLik>;
 
template class CWiseInverse<double>;
template class CWiseInverse<ExtendedFloat>;
template class CWiseInverse<VectorLik>;
template class CWiseInverse<RowLik>;
template class CWiseInverse<MatrixLik>;
 
template class CWiseLog<double>;
template class CWiseLog<ExtendedFloat>;
template class CWiseLog<VectorLik>;
template class CWiseLog<RowLik>;
template class CWiseLog<MatrixLik>;
 
template class CWiseExp<double>;
template class CWiseExp<ExtendedFloat>;
template class CWiseExp<VectorLik>;
template class CWiseExp<RowLik>;
template class CWiseExp<MatrixLik>;
 
template class CWiseConstantPow<double>;
template class CWiseConstantPow<ExtendedFloat>;
template class CWiseConstantPow<VectorLik>;
template class CWiseConstantPow<RowLik>;
template class CWiseConstantPow<MatrixLik>;
 
template class ScalarProduct<DataLik, VectorLik, VectorLik>;
template class ScalarProduct<DataLik, RowLik, RowLik>;
 
template class LogSumExp<DataLik, VectorLik, Eigen::VectorXd>;
template class LogSumExp<DataLik, RowLik, Eigen::RowVectorXd>;
 
template class SumOfLogarithms<VectorLik>;
template class SumOfLogarithms<RowLik>;
 
template class MatrixProduct<ExtendedFloatRowVectorXd, Eigen::RowVectorXd, ExtendedFloatMatrixXd>;
template class MatrixProduct<Eigen::RowVectorXd, Eigen::RowVectorXd, Eigen::MatrixXd>;
template class MatrixProduct<MatrixLik, Eigen::MatrixXd, MatrixLik>;
template class MatrixProduct<MatrixLik, Transposed<Eigen::MatrixXd>, MatrixLik>;
 
template class ShiftDelta<double>;
template class ShiftDelta<VectorLik>;
template class ShiftDelta<RowLik>;
template class ShiftDelta<MatrixLik>;
 
template class CombineDeltaShifted<double>;
template class CombineDeltaShifted<VectorLik>;
template class CombineDeltaShifted<RowLik>;
template class CombineDeltaShifted<MatrixLik>;
template class CombineDeltaShifted<TransitionFunction>;
} // namespace bpp