NexusIoTree.h

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// SPDX-FileCopyrightText: The Bio++ Development Group
//
// SPDX-License-Identifier: CECILL-2.1
 
#ifndef BPP_PHYL_IO_NEXUSIOTREE_H
#define BPP_PHYL_IO_NEXUSIOTREE_H
 
 
#include "../Tree/PhyloTree.h"
#include "../Tree/TreeTemplate.h"
#include "IoTree.h"
 
namespace bpp
{
class NexusIOTree :
  public virtual AbstractITree,
  public virtual AbstractOTree,
  public virtual AbstractIMultiTree,
  public virtual AbstractOMultiTree,
  public AbstractIPhyloTree,
  public AbstractOPhyloTree,
  public AbstractIMultiPhyloTree,
  public AbstractOMultiPhyloTree
{
public:
  NexusIOTree() {}
 
  virtual ~NexusIOTree() {}
 
public:
  const std::string getFormatName() const override;
  const std::string getFormatDescription() const override;
  /* @} */
 
  using AbstractITree::readTreeTemplate;
 
  std::unique_ptr<TreeTemplate<Node>> readTreeTemplate(std::istream& in) const override;
 
  using AbstractIPhyloTree::readPhyloTree;
 
  std::unique_ptr<PhyloTree> readPhyloTree(std::istream& in) const override;
 
  using AbstractOTree::writeTree;
 
  void writeTree(const Tree& tree, std::ostream& out) const override
  {
    write_(tree, out);
  }
 
  using AbstractOPhyloTree::writePhyloTree;
 
  void writePhyloTree(const PhyloTree& tree, std::ostream& out) const override
  {
    write_(tree, out);
  }
  using AbstractIMultiTree::readTrees;
 
  void readTrees(std::istream& in, std::vector<std::unique_ptr<Tree>>& trees) const override;
 
  using AbstractIMultiPhyloTree::readPhyloTrees;
 
  void readPhyloTrees(std::istream& in, std::vector<std::unique_ptr<PhyloTree>>& trees) const override;
  using AbstractOMultiTree::writeTrees;
 
  void writeTrees(const std::vector<const Tree*>& trees, std::ostream& out) const override
  {
    write_(trees, out);
  }
 
  using AbstractOMultiPhyloTree::writePhyloTrees;
 
  void writePhyloTrees(const std::vector<const PhyloTree*>& trees, std::ostream& out) const override
  {
    write_(trees, out);
  }
protected:
  void write_(const Tree& tree, std::ostream& out) const;
 
  void write_(const PhyloTree& tree, std::ostream& out) const;
 
  template<class N>
  void write_(const TreeTemplate<N>& tree, std::ostream& out) const;
 
  void write_(const std::vector<const Tree*>& trees, std::ostream& out) const;
 
  void write_(const std::vector<const PhyloTree*>& trees, std::ostream& out) const;
 
  template<class N>
  void write_(const std::vector<TreeTemplate<N>*>& trees, std::ostream& out) const;
};
} // end of namespace bpp.
#endif // BPP_PHYL_IO_NEXUSIOTREE_H